Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   PO910_RS16860 Genome accession   NZ_CP116981
Coordinates   3478338..3479330 (-) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli strain E6474     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3473338..3484330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PO910_RS16835 (PO910_16835) ygbN 3473993..3475357 (+) 1365 WP_124053591.1 GntP family transporter -
  PO910_RS16840 (PO910_16840) - 3475396..3475632 (-) 237 WP_000562984.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  PO910_RS16845 (PO910_16845) - 3475643..3477070 (-) 1428 WP_000863235.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  PO910_RS16850 (PO910_16850) - 3477070..3477663 (-) 594 WP_000767718.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  PO910_RS16855 (PO910_16855) - 3477810..3478217 (+) 408 WP_001208070.1 MarR family winged helix-turn-helix transcriptional regulator -
  PO910_RS16860 (PO910_16860) rpoS 3478338..3479330 (-) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  PO910_RS16865 (PO910_16865) nlpD 3479393..3480487 (-) 1095 WP_224692580.1 murein hydrolase activator NlpD -
  PO910_RS16870 (PO910_16870) pcm 3480672..3481298 (-) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  PO910_RS16875 (PO910_16875) surE 3481292..3482053 (-) 762 WP_001295182.1 5'/3'-nucleotidase SurE -
  PO910_RS16880 (PO910_16880) truD 3482034..3483083 (-) 1050 WP_000568921.1 tRNA pseudouridine(13) synthase TruD -
  PO910_RS16885 (PO910_16885) ispF 3483080..3483559 (-) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  PO910_RS16890 (PO910_16890) ispD 3483559..3484269 (-) 711 WP_000246138.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=715537 PO910_RS16860 WP_000081550.1 3478338..3479330(-) (rpoS) [Escherichia coli strain E6474]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=715537 PO910_RS16860 WP_000081550.1 3478338..3479330(-) (rpoS) [Escherichia coli strain E6474]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715