Detailed information NTG0071552

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: DLM_RS21920
• Genome accession: NZ_AP018823
• Coordinates: 4660126..4661253 (-)
• Length: 375 a.a.
• NCBI ID: WP_089082799.1
• Uniprot ID: A0A3G9GS59
• Organism: Aquitalea magnusonii strain H3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4655126..4666253

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DLM_RS21900 (DLM_4363)	-	4655527..4657314 (+)	1788	WP_089082803.1	PglL family O-oligosaccharyltransferase	-
DLM_RS21905 (DLM_4364)	rpoH	4657429..4658292 (-)	864	WP_089082802.1	RNA polymerase sigma factor RpoH	-
DLM_RS21910 (DLM_4365)	ftsX	4658493..4659401 (-)	909	WP_089082801.1	permease-like cell division protein FtsX	-
DLM_RS21915 (DLM_4366)	ftsE	4659398..4660051 (-)	654	WP_089082800.1	cell division ATP-binding protein FtsE	-
DLM_RS21920 (DLM_4367)	pilA	4660126..4661253 (-)	1128	WP_089082799.1	signal recognition particle-docking protein FtsY	Machinery gene
DLM_RS21925 (DLM_4368)	-	4661324..4662688 (+)	1365	WP_089082798.1	M16 family metallopeptidase	-
DLM_RS21930 (DLM_4369)	-	4662678..4663985 (+)	1308	WP_167467191.1	M16 family metallopeptidase	-
DLM_RS21935 (DLM_4370)	rsmD	4664064..4664624 (+)	561	WP_089082796.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
DLM_RS21940 (DLM_4371)	-	4664724..4664975 (+)	252	WP_089082795.1	YfhL family 4Fe-4S dicluster ferredoxin	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 39885.86 Da
• Isoelectric Point: 5.8943

>NTDB_id=71552 DLM_RS21920 WP_089082799.1 4660126..4661253(-) (pilA) [Aquitalea magnusonii strain H3]
MFSFFKKKPKPVETPVIEPQAEVSSDALAESAPTPPADSSNTIAKSSDPATPAAISPVEAAQAAPSEPDAPARKLSWTER
LKAGLSKTRDKLGKSLAGLFGGGKIDEDLYEELETVLLTADMGMDATLHLLKDVRERVSLRGLKDGSELKGALKDSLNEL
IQPLEKPLDVSGKKPFVIMMAGVNGAGKTTSIGKLAKYYQQQGKSVLLAAGDTFRAAAREQLMAWGERNNVTVIAQQGGD
AAAVCYDAIQAATARGIDIVLADTAGRLPTQLHLMEEIKKVKRVIQKALPEAPHEVILVLDANIGQNAISQVKVFDDALG
LTGLILTKLDGTAKGGVIAAIAKQRPIPLRFIGVGESIDDLRPFNSKDYVDALFD

Nucleotide

• Length: 1128 bp

>NTDB_id=71552 DLM_RS21920 WP_089082799.1 4660126..4661253(-) (pilA) [Aquitalea magnusonii strain H3]
ATGTTTAGTTTCTTCAAGAAAAAGCCCAAACCGGTTGAAACCCCGGTAATCGAACCACAGGCAGAAGTGTCCAGCGATGC
GCTGGCCGAATCTGCCCCTACGCCGCCGGCAGACAGCAGTAACACCATTGCAAAGAGCAGTGATCCCGCCACGCCAGCGG
CCATCAGCCCCGTCGAAGCCGCGCAAGCCGCGCCCAGCGAGCCGGACGCCCCTGCGCGCAAACTCAGCTGGACGGAGCGC
CTGAAGGCCGGCCTGTCCAAGACACGCGATAAGCTGGGCAAATCGCTGGCCGGACTGTTTGGTGGCGGCAAGATCGACGA
GGACCTCTACGAGGAGCTGGAAACCGTTCTGCTGACTGCCGACATGGGCATGGATGCCACGCTACACCTGCTGAAGGATG
TACGCGAGCGCGTCAGCCTGAGGGGCCTGAAAGATGGCAGTGAGCTGAAGGGCGCACTCAAGGACTCGCTCAACGAACTG
ATTCAGCCACTGGAAAAACCGCTGGATGTCAGCGGCAAGAAACCGTTTGTCATCATGATGGCCGGGGTGAATGGGGCGGG
TAAAACCACTTCCATTGGCAAACTGGCGAAATACTATCAGCAACAGGGCAAGAGCGTGTTGCTGGCCGCTGGCGACACTT
TCCGTGCCGCCGCCCGCGAACAGCTGATGGCCTGGGGTGAGCGTAACAATGTCACCGTGATTGCCCAGCAAGGTGGCGAT
GCCGCCGCCGTATGCTATGACGCCATCCAGGCCGCCACGGCCCGTGGCATCGATATCGTGCTGGCGGATACCGCCGGCCG
ACTGCCTACCCAGTTGCACCTGATGGAAGAAATCAAGAAGGTGAAGCGCGTCATCCAAAAAGCACTGCCGGAGGCACCAC
ACGAGGTCATTCTGGTGCTGGATGCCAACATTGGCCAGAATGCCATCAGCCAGGTAAAGGTATTTGATGATGCTTTGGGC
CTGACCGGCCTGATTCTGACCAAGCTGGATGGCACGGCCAAGGGTGGCGTGATTGCGGCAATTGCCAAGCAACGGCCAAT
TCCGCTACGTTTTATCGGCGTGGGTGAGAGCATTGACGACCTGCGGCCATTCAATAGCAAGGATTATGTCGACGCCCTGT
TCGACTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (175-374)

• SRP54-type protein, helical bundle domain (SRP54_N) (90-157)

3D structure

• AlphaFold DB: A0A3G9GS59

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	62.44	100	0.696