Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NQ230_RS15625 Genome accession   NZ_CP102247
Coordinates   3255935..3256561 (-) Length   208 a.a.
NCBI ID   WP_121425763.1    Uniprot ID   -
Organism   Enterobacter asburiae strain R_A5.MM     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3250935..3261561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ230_RS15610 (NQ230_15610) helD 3251172..3253226 (-) 2055 WP_121425764.1 DNA helicase IV -
  NQ230_RS15615 (NQ230_15615) - 3253350..3253796 (+) 447 WP_023311032.1 YccF domain-containing protein -
  NQ230_RS15620 (NQ230_15620) yccS 3253816..3255978 (+) 2163 WP_257258122.1 YccS family putative transporter -
  NQ230_RS15625 (NQ230_15625) sxy/tfoX 3255935..3256561 (-) 627 WP_121425763.1 TfoX/Sxy family DNA transformation protein Regulator
  NQ230_RS15630 (NQ230_15630) sulA 3256779..3257288 (+) 510 WP_121425762.1 SOS-induced cell division inhibitor SulA -
  NQ230_RS15635 (NQ230_15635) ompA 3257643..3258698 (+) 1056 WP_023311028.1 porin OmpA -
  NQ230_RS15640 (NQ230_15640) matP 3258762..3259214 (-) 453 WP_063143983.1 macrodomain Ter protein MatP -
  NQ230_RS15645 (NQ230_15645) - 3259401..3261161 (+) 1761 WP_257258123.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23964.50 Da        Isoelectric Point: 9.2151

>NTDB_id=715466 NQ230_RS15625 WP_121425763.1 3255935..3256561(-) (sxy/tfoX) [Enterobacter asburiae strain R_A5.MM]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRELGARASWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=715466 NQ230_RS15625 WP_121425763.1 3255935..3256561(-) (sxy/tfoX) [Enterobacter asburiae strain R_A5.MM]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCCCCGTTGGGCGAGATACATCATCGCGCGCT
GTTTGGAGGCTACACCCTGGCGGTGGATGATGCGGTTTTTGCCATGGTGTCCGATGGCGAGCTTTATCTTCGCGCCTGTG
AGGAGAGTGCGAAATACTGTGTAAAGAATGCTTCTTCATTTTTGACGTTGATGAAGCGAGGCCGCCCGGTGCTGCTCAAC
TATTATCGTGTGGATGACGGATTATGGCAGGACAGGGAGCGGTTGCTTCAGCTCTCCTCGTTTGCGCTCAGTGCGGCAAG
AAAAGAGCGCTATCAACGCCATCAGCGAAACCGACTCAAGGATCTGCCAAACCTGACCTTTCAGCTTGAAGTCTTGCTCT
TTGAAGCAGGCATTACCAACGAGGAAACGCTGCGGGAGCTGGGTGCCAGAGCGAGCTGGCTAAAGATGCGGGCAAAAAAC
AAAGCGCTCAGTATTAAAGTTCTCTTTGCGCTGGAAGGGGCAATCGAAGGGCTGCATGAGGCGGCACTCCCGGCTGGTAT
TCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567