Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   PQP10_RS14935 Genome accession   NZ_CP116976
Coordinates   3091169..3092998 (+) Length   609 a.a.
NCBI ID   WP_001338636.1    Uniprot ID   -
Organism   Escherichia coli strain CUVM53     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3086169..3097998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQP10_RS14900 (PQP10_14900) - 3086507..3087354 (-) 848 Protein_2912 YPO3983 family protein -
  PQP10_RS14905 (PQP10_14905) - 3087537..3087683 (+) 147 Protein_2913 CorA family divalent cation transporter -
  PQP10_RS14910 (PQP10_14910) yigF 3087724..3088104 (-) 381 WP_000032581.1 DUF2628 domain-containing protein -
  PQP10_RS14915 (PQP10_14915) yigG 3088118..3088498 (-) 381 Protein_2915 protein YigG -
  PQP10_RS14920 (PQP10_14920) rarD 3088593..3089483 (-) 891 WP_000339104.1 EamA family transporter RarD -
  PQP10_RS14925 (PQP10_14925) yigI 3089535..3090002 (-) 468 WP_001277142.1 acyl-CoA thioesterase YigI -
  PQP10_RS14930 (PQP10_14930) pldA 3090167..3091036 (+) 870 WP_001259700.1 phospholipase A -
  PQP10_RS14935 (PQP10_14935) recQ 3091169..3092998 (+) 1830 WP_001338636.1 ATP-dependent DNA helicase RecQ Machinery gene
  PQP10_RS14940 (PQP10_14940) rhtC 3093062..3093682 (+) 621 WP_000928821.1 threonine export protein RhtC -
  PQP10_RS14945 (PQP10_14945) rhtB 3093744..3094364 (-) 621 WP_000171710.1 homoserine/homoserine lactone efflux protein -
  PQP10_RS14950 (PQP10_14950) pldB 3094475..3095497 (+) 1023 WP_000487640.1 lysophospholipase L2 -
  PQP10_RS14955 (PQP10_14955) yigL 3095505..3096305 (+) 801 WP_000285362.1 sugar/pyridoxal phosphate phosphatase YigL -
  PQP10_RS14960 (PQP10_14960) bioP 3096381..3097280 (+) 900 WP_001196242.1 biotin transporter -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 68359.52 Da        Isoelectric Point: 7.2543

>NTDB_id=715459 PQP10_RS14935 WP_001338636.1 3091169..3092998(+) (recQ) [Escherichia coli strain CUVM53]
MAQAEVLNLESGAKQVLQDTFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKD
QVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRP
EYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKPGI
IYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESY
YQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNC
DICLDPPKQYDGSTDAQIALSTIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLG
LVTQNIAQHSALQLTEAARPVLRGESSLQLAVPRIVALKPKAMQKSFGGNYDRKLFAKLRKLRKSIADESNVPPYVVFND
ATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHVDGDDEE

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=715459 PQP10_RS14935 WP_001338636.1 3091169..3092998(+) (recQ) [Escherichia coli strain CUVM53]
GTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGCTAAACAGGTTTTACAAGATACCTTTGGCTACCAACAGTTTCG
CCCCGGCCAGGAAGAAATTATCGACACTGTGCTTTCCGGTCGCGATTGCCTGGTCGTCATGCCCACCGGTGGCGGAAAAT
CCCTTTGCTATCAAATTCCTGCCTTATTGCTAAACGGCCTTACCGTGGTTGTTTCACCGCTGATTTCGTTGATGAAAGAT
CAGGTGGATCAACTGCAAGCCAACGGCGTGGCGGCGGCGTGCCTTAACTCGACGCAAACCCGCGAGCAGCAACTTGAAGT
GATGACAGGCTGTCGCACCGGGCAAATCCGCCTGCTTTATATCGCGCCGGAACGCCTGATGCTGGATAACTTTCTTGAGC
ATCTGGCGCACTGGAATCCGGTGTTATTAGCCGTTGATGAAGCGCACTGTATCTCCCAATGGGGCCACGATTTCCGCCCG
GAATATGCCGCGCTCGGTCAGTTGCGCCAGCGGTTCCCGACGCTGCCGTTTATGGCGCTGACCGCCACAGCCGACGACAC
CACGCGCCAGGATATCGTGCGCCTGCTGGGGCTGAACGATCCGCTGATTCAAATCAGCAGTTTTGACCGTCCGAATATTC
GCTACATGCTGATGGAGAAATTCAAACCGCTCGATCAGTTGATGCGCTACGTGCAGGAACAGCGCGGTAAGCCCGGCATT
ATCTACTGCAACAGCCGGGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGTATTAGCGCGGCGGCCTATCA
TGCCGGGCTGGAAAATAATGTCCGCGCCGACGTGCAGGAGAAATTCCAGCGCGATGACCTGCAAATTGTGGTGGCGACGG
TGGCGTTCGGCATGGGCATCAATAAACCAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTAT
TATCAGGAAACCGGTCGCGCCGGGCGTGATGGCCTGCCTGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTG
GCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCAGGATATCGAGCGCCACAAACTCAATGCGATGGGCGCGT
TTGCCGAAGCGCAAACTTGCCGTCGTCTGGTATTGCTGAACTATTTTGGCGAAGGGCGTCAGGAGCCGTGCGGGAACTGC
GATATCTGCCTCGATCCGCCGAAACAGTACGACGGTTCAACCGATGCTCAGATTGCCCTTTCCACCATTGGTCGTGTGAA
TCAGCGGTTTGGGATGGGTTATGTGGTGGAAGTGATTCGTGGTGCTAATAACCAGCGTATCCGCGACTATGGTCATGACA
AACTGAAAGTCTATGGCATGGGCCGTGATAAAAGCCATGAACATTGGGTGAGCGTGATCCGCCAGCTGATTCACCTCGGC
CTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGCTGCGCGGCGAATCCTC
TTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAACTATGATCGCA
AACTGTTCGCCAAATTACGCAAACTGCGTAAATCGATTGCCGATGAAAGCAATGTCCCGCCGTACGTGGTGTTTAACGAC
GCAACCTTGATTGAGATGGCTGAACAGATGCCGATCACCGCCAGCGAAATGCTCAGCGTTAACGGCGTTGGGATGCGCAA
GCTGGAACGCTTTGGTAAACCGTTTATGGCGCTTATCCGCGCGCATGTTGACGGCGACGACGAAGAGTAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(223-330)

RQC domain (RQC)

(406-514)

DEAD/DEAH box helicase (DEAD)

(28-187)

HRDC domain (HRDC)

(533-599)

RecQ zinc-binding (RecQ_Zn_bind)

(343-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.203

97.209

0.391