Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NQ842_RS16270 Genome accession   NZ_CP102246
Coordinates   3409655..3410281 (-) Length   208 a.a.
NCBI ID   WP_013097255.1    Uniprot ID   A0A427KI93
Organism   Enterobacter cloacae complex sp. R_G8     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3404655..3415281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ842_RS16255 (NQ842_16255) helD 3404893..3406947 (-) 2055 WP_046888174.1 DNA helicase IV -
  NQ842_RS16260 (NQ842_16260) - 3407070..3407516 (+) 447 WP_014831318.1 YccF domain-containing protein -
  NQ842_RS16265 (NQ842_16265) yccS 3407536..3409698 (+) 2163 WP_014831317.1 YccS family putative transporter -
  NQ842_RS16270 (NQ842_16270) sxy/tfoX 3409655..3410281 (-) 627 WP_013097255.1 TfoX/Sxy family DNA transformation protein Regulator
  NQ842_RS16275 (NQ842_16275) sulA 3410499..3411008 (+) 510 WP_013097256.1 SOS-induced cell division inhibitor SulA -
  NQ842_RS16280 (NQ842_16280) ompA 3411363..3412415 (+) 1053 WP_014831316.1 porin OmpA -
  NQ842_RS16285 (NQ842_16285) matP 3412480..3412932 (-) 453 WP_013097258.1 macrodomain Ter protein MatP -
  NQ842_RS16290 (NQ842_16290) - 3413119..3414879 (+) 1761 WP_046888169.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24000.57 Da        Isoelectric Point: 9.2254

>NTDB_id=715445 NQ842_RS16270 WP_013097255.1 3409655..3410281(-) (sxy/tfoX) [Enterobacter cloacae complex sp. R_G8]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEESAKYCVKNGSSFLTLMKRGRPILLN
YYRVDDGLWQDRERLLQLSSYALNAARKERIQRYQRNRLKDLPNLTFQLEVLLCEAGITNEDTLRSLGARTSWLKLRAKN
KALSIKVLFALEGAIEGLHEAALPAEIRRELTEWFNALPEPQENRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=715445 NQ842_RS16270 WP_013097255.1 3409655..3410281(-) (sxy/tfoX) [Enterobacter cloacae complex sp. R_G8]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCATTAGGAGAAATTCATCATCGTGCGCT
TTTTGGTGGCTATACCCTGGCCGTCGATGAAGCGGTGTTTGCCATGGTGTCAGACGGTGAGCTTTACCTTCGCGCCTGTG
AGGAAAGTGCAAAGTACTGTGTCAAAAACGGATCCTCCTTTTTGACCTTAATGAAACGCGGCCGTCCGATCCTGCTTAAC
TACTATCGTGTGGATGACGGACTCTGGCAGGACCGGGAGCGGTTGCTTCAGCTTTCCTCTTACGCGCTTAATGCCGCGCG
TAAAGAGCGCATACAGCGCTACCAGCGAAACCGGCTTAAGGATCTGCCCAACCTGACTTTTCAGCTGGAAGTCCTGCTCT
GTGAAGCCGGGATTACCAACGAAGATACCCTCCGGTCGCTGGGAGCCAGAACGAGCTGGCTAAAGCTGCGGGCAAAAAAT
AAAGCGCTCAGTATTAAAGTACTGTTTGCCCTGGAAGGGGCTATTGAGGGCCTGCATGAAGCGGCACTCCCGGCGGAGAT
TCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCGCTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A427KI93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567