Detailed information NTG0715436

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PQP10_RS09610
• Genome accession: NZ_CP116976
• Coordinates: 1964129..1965121 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CUVM53
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1959129..1970121

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PQP10_RS09590 (PQP10_09590)	otnK	1959904..1961166 (+)	1263	WP_272772670.1	3-oxo-tetronate kinase	-
PQP10_RS09595 (PQP10_09595)	ygbL	1961163..1961801 (+)	639	WP_001278994.1	aldolase	-
PQP10_RS09600 (PQP10_09600)	ygbM	1961806..1962582 (+)	777	WP_272772672.1	HPr family phosphocarrier protein	-
PQP10_RS09605 (PQP10_09605)	ygbN	1962671..1964035 (+)	1365	WP_000104459.1	GntP family transporter	-
PQP10_RS09610 (PQP10_09610)	rpoS	1964129..1965121 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
PQP10_RS09615 (PQP10_09615)	nlpD	1965184..1966278 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
PQP10_RS09620 (PQP10_09620)	pcm	1966463..1967089 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
PQP10_RS09625 (PQP10_09625)	surE	1967083..1967844 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
PQP10_RS09630 (PQP10_09630)	truD	1967825..1968874 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
PQP10_RS09635 (PQP10_09635)	ispF	1968871..1969350 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PQP10_RS09640 (PQP10_09640)	ispD	1969350..1970060 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=715436 PQP10_RS09610 WP_000081550.1 1964129..1965121(-) (rpoS) [Escherichia coli strain CUVM53]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=715436 PQP10_RS09610 WP_000081550.1 1964129..1965121(-) (rpoS) [Escherichia coli strain CUVM53]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715