Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PQP09_RS21535 Genome accession   NZ_CP116970
Coordinates   4377263..4377868 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain CUVM3     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4372263..4382868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQP09_RS21505 (PQP09_21505) rsmS 4372968..4373129 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  PQP09_RS21510 (PQP09_21510) priC 4373143..4373670 (-) 528 WP_000844848.1 primosomal replication protein N'' -
  PQP09_RS21515 (PQP09_21515) ybaN 4373740..4374117 (+) 378 WP_001188905.1 DUF454 family protein -
  PQP09_RS21520 (PQP09_21520) apt 4374270..4374821 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  PQP09_RS21525 (PQP09_21525) dnaX 4374950..4376881 (+) 1932 WP_000122007.1 DNA polymerase III subunit gamma/tau -
  PQP09_RS21530 (PQP09_21530) ybaB 4376934..4377263 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  PQP09_RS21535 (PQP09_21535) recR 4377263..4377868 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  PQP09_RS21540 (PQP09_21540) htpG 4377978..4379852 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  PQP09_RS21545 (PQP09_21545) adk 4380033..4380677 (+) 645 WP_001696974.1 adenylate kinase -
  PQP09_RS21550 (PQP09_21550) hemH 4380809..4381771 (+) 963 WP_001250120.1 ferrochelatase -
  PQP09_RS21555 (PQP09_21555) aes 4381768..4382727 (-) 960 WP_000801838.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=715403 PQP09_RS21535 WP_001195025.1 4377263..4377868(+) (recR) [Escherichia coli strain CUVM3]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=715403 PQP09_RS21535 WP_001195025.1 4377263..4377868(+) (recR) [Escherichia coli strain CUVM3]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443