Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   PQP09_RS11425 Genome accession   NZ_CP116970
Coordinates   2275368..2276600 (+) Length   410 a.a.
NCBI ID   WP_001606115.1    Uniprot ID   -
Organism   Escherichia coli strain CUVM3     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 2270368..2281600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQP09_RS11410 (PQP09_11410) - 2270883..2272559 (+) 1677 WP_001331697.1 polysaccharide biosynthesis/export family protein -
  PQP09_RS11415 (PQP09_11415) kdsB 2272569..2273309 (+) 741 WP_000030744.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PQP09_RS11420 (PQP09_11420) - 2273306..2275333 (+) 2028 WP_021576457.1 capsular polysaccharide biosynthesis protein -
  PQP09_RS11425 (PQP09_11425) kpsS 2275368..2276600 (+) 1233 WP_001606115.1 capsule biosynthesis protein Regulator
  PQP09_RS11430 (PQP09_11430) - 2276854..2277813 (-) 960 WP_001606116.1 hypothetical protein -
  PQP09_RS11435 (PQP09_11435) - 2277847..2278986 (-) 1140 WP_021576458.1 hypothetical protein -
  PQP09_RS11440 (PQP09_11440) - 2279560..2280933 (-) 1374 WP_001606120.1 bifunctional cytidylyltransferase/SDR family oxidoreductase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 48927.60 Da        Isoelectric Point: 10.0596

>NTDB_id=715360 PQP09_RS11425 WP_001606115.1 2275368..2276600(+) (kpsS) [Escherichia coli strain CUVM3]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTTGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGVYYGEMIFNKIKLD
KYFQSLSCQV

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=715360 PQP09_RS11425 WP_001606115.1 2275368..2276600(+) (kpsS) [Escherichia coli strain CUVM3]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGTTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTGCCGAGGTTAATGAACGAGTTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGTCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGGCTCTATCGACCATTAATTAAGCGATTGAGTAAGG
AATATGGCTTAGGCGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTAGTG
ACGATTAACAGTACGACGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTATTGGTTAAGACGCAGGTTAATGGGGTTTATTATGGGGAGATGATTTTTAACAAGATAAAACTGGAT
AAATATTTTCAGAGCTTGTCGTGTCAAGTATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.646

96.585

0.383