Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   M0P28_RS03920 Genome accession   NZ_CP116958
Coordinates   733232..736474 (+) Length   1080 a.a.
NCBI ID   WP_248488292.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP074     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 728232..741474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0P28_RS03905 (M0P28_03905) pheS 729035..730078 (+) 1044 WP_013642932.1 phenylalanine--tRNA ligase subunit alpha -
  M0P28_RS03910 (M0P28_03910) - 730114..730606 (+) 493 Protein_708 GNAT family N-acetyltransferase -
  M0P28_RS03915 (M0P28_03915) pheT 730677..733082 (+) 2406 WP_013851661.1 phenylalanine--tRNA ligase subunit beta -
  M0P28_RS03920 (M0P28_03920) rexB 733232..736474 (+) 3243 WP_248488292.1 ATP-dependent nuclease subunit B Machinery gene
  M0P28_RS03925 (M0P28_03925) rexA 736464..740096 (+) 3633 WP_061100317.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  M0P28_RS03930 (M0P28_03930) - 740201..741346 (-) 1146 WP_013851664.1 cobalamin-independent methionine synthase II family protein -

Sequence

Protein


Download         Length: 1080 a.a.        Molecular weight: 124000.44 Da        Isoelectric Point: 5.0618

>NTDB_id=715265 M0P28_RS03920 WP_248488292.1 733232..736474(+) (rexB) [Streptococcus pasteurianus strain WUSP074]
MKLLYTDIQYDMTEILVGEAVAQADAGKRVFYIAPNSLSFEKERAVLELLRDEASFAITVTRFAQMARYFVLNEAQVKES
IDDNGLAMIFYRALSHFSDTDLKVFGRLKQDTNFIKQLVDLYKELKTANMTVLNLTELHSAEKQEDLVKIFLAVNDILLA
NQYDNQSKIAYFAKQVEAGHLDATLENVSLVIDGFTRFSAEEEYLVSLLEEKCAQVIIGTYSSQKAYRAAFSTGNIYQAS
LDFLRGLAAKFHAQPQYVESSQKSHEAFSKLSKLFEAKHDFTSSDVTLTADDKKHYAIWDVINQKEEVEHVAKAIRHKLY
QGYRYKDILVLLGDVDSYRLQIGKIFDKYDIPYYFGKAESMSDHPLVHFIDSLERVKRYRFRTEDVVNLLKTGLYGNFKQ
EDLDLFEQYLIYADIKGQSKFAKEFTIVYKGKKHLAFVNRMREQIMTPLLALFKAQKQRGSSLLEKLMTFLHAIHLPDNL
EGMVATFSENEQEKHEQVWRTFTGILTQFQTIFGQEKLSLDDCLSLICSGMLAAQYRVVPATVDVVSVKSYDLVEPHTNK
FVFALGMTQAHFPKIAQNSSLISDEERAQINESTDDNQRFDIVSRENIKKNHFAALSLFNSATEELVLSLPQIANEAEDT
ESSYLTELASFGVPVLAKGRNRLSTDAEDIGNYKALLSCVIEVNRLAIEEERELSKEEQTFWSVAVRYLRKKLAAEGIEL
PLIKDNMQTKTVSADVIEARFPSDEPILLSSSAVTTFYNNQYKYFLQYVLGLQEVETIHPDARNHGTYLHRVFELVMKDD
SNHSFDSKLDKAIQTTNLEDDFKFVYEEDEESHYSLTVLEDIARSTATILRDDAQIQVESEEETFELMIANSVRIRGIID
RVDRLSDGSLGIVDYKSSRNTFDIQKFYNGLSPQLVTYVQALRDKKGLSESEHIFGAMYLHMQEPKVDLSSVATTEKILE
NLAKELTYRGLFLEDEKAYLANGRYHLNDSLYSQEELEILLAYNQNLYLKAAEQIKKGHFLINPYSEDGKSVQGDQLKAI
TRFEADRHMPYARKWYKLPRKDRRQGFLSLMQEEEETDDL

Nucleotide


Download         Length: 3243 bp        

>NTDB_id=715265 M0P28_RS03920 WP_248488292.1 733232..736474(+) (rexB) [Streptococcus pasteurianus strain WUSP074]
ATGAAATTACTATACACAGATATTCAGTATGATATGACTGAAATTTTAGTTGGAGAGGCAGTAGCTCAGGCAGATGCTGG
TAAGCGTGTTTTTTACATTGCTCCCAACTCTTTATCTTTTGAAAAAGAAAGAGCAGTTTTGGAGTTGTTACGAGACGAAG
CTTCTTTTGCGATTACGGTAACACGTTTTGCTCAAATGGCTCGTTATTTTGTGTTAAATGAAGCGCAGGTCAAGGAAAGC
ATTGATGACAATGGCTTGGCTATGATTTTTTATCGTGCTTTGTCACATTTTTCAGATACAGATTTGAAAGTTTTTGGGCG
TTTGAAGCAGGATACGAATTTTATCAAGCAGTTGGTTGATTTGTACAAAGAATTAAAAACGGCTAACATGACTGTGCTTA
ATTTGACAGAATTGCATTCAGCGGAGAAGCAGGAAGATTTGGTGAAAATCTTTTTAGCGGTTAATGATATTTTGCTTGCC
AATCAGTATGATAATCAGAGCAAGATTGCTTATTTTGCAAAGCAGGTTGAGGCAGGACATTTGGATGCCACGCTTGAAAA
TGTGAGCCTTGTCATTGACGGTTTTACACGCTTTTCAGCAGAAGAAGAGTATCTAGTAAGCTTGCTTGAAGAAAAATGTG
CGCAAGTGATTATCGGAACTTACAGTAGTCAAAAGGCGTATAGAGCGGCATTTTCGACGGGAAATATTTACCAAGCGAGT
TTAGATTTCTTGCGTGGTTTAGCGGCTAAATTCCATGCGCAACCGCAGTATGTTGAAAGTTCTCAGAAATCTCACGAGGC
TTTTTCAAAATTATCAAAATTATTCGAAGCAAAGCACGACTTTACGAGTTCAGATGTGACGCTGACGGCTGATGATAAAA
AACATTACGCTATTTGGGATGTCATTAATCAGAAAGAAGAGGTCGAGCATGTGGCAAAAGCTATTCGTCATAAGCTTTAT
CAAGGGTATCGTTACAAGGATATTTTAGTGCTCTTAGGTGATGTGGACAGCTATCGTTTGCAAATTGGCAAGATTTTTGA
CAAATATGACATTCCTTATTATTTCGGAAAAGCGGAGTCAATGAGTGACCACCCTTTGGTGCATTTTATTGATTCGTTGG
AGCGTGTGAAGCGTTATCGTTTTCGTACCGAAGATGTTGTTAATCTGTTAAAAACAGGGCTTTATGGAAATTTCAAGCAA
GAAGATTTAGACCTTTTTGAGCAATATTTGATTTATGCTGATATTAAGGGACAAAGCAAATTTGCCAAGGAGTTCACGAT
TGTTTATAAAGGAAAAAAGCATTTAGCCTTTGTTAATCGCATGCGCGAGCAAATCATGACGCCTTTACTTGCTTTATTTA
AGGCGCAAAAGCAACGTGGCTCTAGTTTGCTTGAGAAATTAATGACATTTTTACACGCCATTCATTTGCCTGATAATCTA
GAAGGCATGGTAGCGACTTTTTCAGAAAATGAACAAGAAAAGCATGAGCAAGTTTGGCGGACATTTACAGGTATTTTAAC
GCAATTTCAAACGATTTTTGGGCAAGAAAAGTTATCGCTGGACGACTGTTTGTCCTTGATTTGTAGCGGAATGTTAGCTG
CGCAGTACCGTGTAGTGCCTGCAACGGTTGATGTTGTTTCGGTCAAATCTTATGATTTGGTGGAACCGCACACCAATAAA
TTTGTCTTTGCTTTGGGCATGACGCAGGCACATTTTCCAAAAATTGCGCAAAATAGTAGTCTGATTTCAGATGAAGAACG
TGCCCAAATCAACGAATCAACTGATGATAATCAACGTTTTGATATTGTTAGTCGCGAAAATATCAAGAAAAATCATTTTG
CTGCCCTATCGTTATTTAACTCGGCGACAGAAGAATTGGTGCTTAGTCTGCCACAAATTGCCAACGAAGCCGAAGATACG
GAATCTTCTTACTTAACCGAATTAGCTAGCTTTGGTGTGCCAGTTCTTGCTAAAGGTCGTAATCGTTTGTCAACGGATGC
TGAGGACATTGGTAATTATAAGGCCTTATTGTCTTGTGTGATTGAAGTCAATCGTTTGGCGATTGAAGAAGAGCGTGAAC
TTAGCAAGGAAGAGCAAACTTTCTGGTCAGTTGCTGTTCGTTATCTTCGAAAAAAATTGGCAGCAGAAGGCATTGAATTG
CCGCTGATTAAGGATAATATGCAAACTAAGACGGTCTCTGCCGACGTGATTGAGGCACGTTTTCCAAGTGATGAGCCGAT
TTTGTTATCATCATCTGCAGTCACTACCTTCTACAATAATCAGTATAAATATTTCTTGCAATATGTTCTTGGCTTGCAAG
AGGTTGAGACGATTCACCCAGATGCCAGAAATCATGGTACCTACCTGCATCGTGTTTTTGAATTGGTCATGAAAGATGAT
TCAAACCATTCTTTTGATAGCAAACTTGATAAAGCTATTCAGACAACGAATTTGGAAGACGATTTCAAATTTGTTTACGA
AGAAGATGAAGAAAGTCATTATTCTTTGACTGTCTTGGAAGATATTGCTAGAAGTACAGCAACGATTTTACGTGATGATG
CTCAGATTCAAGTTGAAAGTGAAGAAGAAACGTTTGAATTAATGATTGCAAATAGTGTTCGTATCAGAGGAATTATTGAC
CGTGTTGACCGCTTATCAGACGGCAGTCTTGGCATTGTGGATTACAAATCAAGTCGCAATACTTTTGATATTCAGAAATT
CTACAATGGTTTAAGTCCGCAATTGGTGACTTATGTGCAAGCTTTGCGTGATAAAAAAGGCTTGAGCGAGTCGGAGCATA
TTTTTGGTGCTATGTATTTGCATATGCAAGAGCCAAAAGTTGATTTGTCATCGGTGGCTACAACAGAGAAAATTTTAGAA
AATTTGGCTAAAGAGTTGACTTATCGTGGTCTATTCTTGGAAGATGAAAAAGCGTATTTAGCCAATGGTCGCTATCATCT
GAATGATTCGCTTTACAGTCAAGAAGAACTTGAGATTTTGCTAGCTTATAATCAAAACTTATATCTGAAAGCAGCAGAGC
AGATTAAGAAAGGGCATTTCTTGATTAATCCTTATAGTGAGGACGGTAAGTCAGTTCAAGGAGACCAATTGAAGGCAATC
ACACGATTTGAGGCTGACCGCCATATGCCTTATGCTCGCAAATGGTATAAATTACCAAGAAAAGATAGACGTCAAGGCTT
TTTGAGCCTAATGCAAGAAGAGGAGGAAACAGATGATCTTTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(749-1026)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

44.074

100

0.441