Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   NQ200_RS18940 Genome accession   NZ_CP102172
Coordinates   4149403..4150842 (-) Length   479 a.a.
NCBI ID   WP_099994508.1    Uniprot ID   A0AAX3VN16
Organism   Aeromonas salmonicida subsp. masoucida strain wx3-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4144403..4155842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ200_RS18910 - 4144675..4145415 (+) 741 WP_113720794.1 KDGP aldolase family protein -
  NQ200_RS18915 - 4145520..4147424 (+) 1905 WP_309265807.1 PRD domain-containing protein -
  NQ200_RS18920 npr 4147443..4147715 (-) 273 WP_005314403.1 PTS phosphocarrier protein NPr -
  NQ200_RS18925 rapZ 4147736..4148602 (-) 867 WP_005314405.1 RNase adapter RapZ -
  NQ200_RS18930 ptsN 4148645..4149091 (-) 447 WP_005314406.1 PTS IIA-like nitrogen regulatory protein PtsN -
  NQ200_RS18935 hpf 4149094..4149381 (-) 288 WP_005305957.1 ribosome hibernation promoting factor -
  NQ200_RS18940 rpoN/rpoN1 4149403..4150842 (-) 1440 WP_099994508.1 RNA polymerase factor sigma-54 Machinery gene
  NQ200_RS18945 lptB 4150908..4151633 (-) 726 WP_005314412.1 LPS export ABC transporter ATP-binding protein -
  NQ200_RS18950 lptA 4151637..4152164 (-) 528 WP_005314414.1 lipopolysaccharide transport periplasmic protein LptA -
  NQ200_RS18955 lptC 4152151..4152711 (-) 561 WP_005314417.1 LPS export ABC transporter periplasmic protein LptC -
  NQ200_RS18960 kdsC 4152708..4153262 (-) 555 WP_005314419.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  NQ200_RS18965 - 4153262..4154257 (-) 996 WP_034524103.1 KpsF/GutQ family sugar-phosphate isomerase -
  NQ200_RS18970 mlaF 4154465..4155265 (+) 801 WP_011898278.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53877.82 Da        Isoelectric Point: 4.3484

>NTDB_id=715157 NQ200_RS18940 WP_099994508.1 4149403..4150842(-) (rpoN/rpoN1) [Aeromonas salmonicida subsp. masoucida strain wx3-1]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEVQETSPEEPVDDSQLDSSDAMAQDQMP
DELPVDTTWEDVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDLDAAIALAIIDAIDDSGYLTVSLED
IQAAVSSEDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLGQYAPELPWLNEAREVIKEHMDLLGNRDYRTLARK
TKLKESDLKEVLDLIQQLEPRPGNGIIQSDSQYVIPDVTVVKKGNKWVVELNPDSAPRIRVNETYAAMARQARTSQDTQF
IRSHLQEAKWFIKSLESRNDTLLKVATCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=715157 NQ200_RS18940 WP_099994508.1 4149403..4150842(-) (rpoN/rpoN1) [Aeromonas salmonicida subsp. masoucida strain wx3-1]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGATAACAATCCTTTGCTTGAGCAAGAGGAGAATGAGG
TTCAGGAGACCAGCCCGGAAGAGCCCGTCGACGACAGCCAGCTCGACTCCAGCGATGCCATGGCCCAGGATCAGATGCCG
GACGAACTGCCGGTAGATACCACCTGGGAAGATGTCTATTCAGCCGGTACAGCCCAGAGCGCAGGCCCCATCCACGATGG
GGAAGACAGCGTCTATCAGGGAGAAACCACCGAGAACCTGCAGGACTATCTGCTGTGGCAGATGCGCCTCACCCCGTTCA
GCGATCTGGATGCTGCCATTGCGCTGGCTATCATAGATGCCATTGATGACTCCGGTTATCTGACCGTCTCTCTCGAAGAT
ATACAGGCGGCAGTGAGCAGCGAGGATGTCGAGGTGGAGCTCGACGAGGTCGAGGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATAGCCGCGCGCTCGGTGCAGGAGTGTCTGCTGATCCAGCTCGGCCAGTACGCTCCTGAACTGCCCT
GGCTCAATGAGGCCAGGGAGGTGATCAAGGAGCACATGGATCTGCTCGGCAACCGTGATTACCGCACCTTGGCACGCAAG
ACCAAGCTCAAGGAGAGTGACCTCAAGGAGGTGCTGGACCTTATCCAGCAGCTGGAGCCCAGGCCGGGTAACGGCATCAT
ACAGAGTGACTCCCAGTACGTGATCCCGGATGTCACCGTCGTCAAGAAGGGCAACAAATGGGTCGTCGAGCTCAACCCTG
ATTCTGCACCGCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCCCGTCAGGCGCGTACCAGCCAGGATACCCAGTTC
ATTCGCTCCCACTTGCAAGAAGCCAAGTGGTTCATCAAGAGTCTGGAGAGTCGCAACGACACCCTGCTCAAGGTGGCGAC
CTGTATTGTCGAGCAACAACAGGGCTTTTTCGAGTATGGTGAAGAAGCCATGAAGCCCATGGTGCTCAACGATATCGCCG
AGGCGGTGGAGATGCATGAGTCGACCATTTCCAGGGTGACGACCCAGAAATACATGCATACCCCCCGCGGCATCTTCGAA
CTGAAGTTTTTTTTCTCCAGTCATGTGAACACAGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTGATCAA
GAAGCTGGTGACGGCGGAGAATCCCGCCAAGCCGCTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.972

100

0.489