Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FFK26_RS05630 Genome accession   NZ_AP024130
Coordinates   1149823..1150338 (+) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain SI-NP020     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1144823..1155338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFK26_RS05585 (BvCmsSINP020_1097) csrA 1145410..1145595 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  FFK26_RS05615 (BvCmsSINP020_1104) yqaB 1147053..1147619 (+) 567 WP_137564228.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  FFK26_RS05620 (BvCmsSINP020_1105) yqaA 1147616..1148044 (+) 429 WP_001287457.1 YqaA family protein -
  FFK26_RS05625 (BvCmsSINP020_1106) gshA 1148117..1149673 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  FFK26_RS05630 (BvCmsSINP020_1107) luxS 1149823..1150338 (+) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  FFK26_RS05635 (BvCmsSINP020_1108) emrB 1150402..1151940 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  FFK26_RS05640 (BvCmsSINP020_1109) emrA 1151957..1153129 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  FFK26_RS05645 (BvCmsSINP020_1110) emrR 1153256..1153786 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  FFK26_RS05650 (BvCmsSINP020_1111) ygaH 1153877..1154212 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  FFK26_RS05655 (BvCmsSINP020_1112) ygaZ 1154202..1154939 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=71509 FFK26_RS05630 WP_001130207.1 1149823..1150338(+) (luxS) [Escherichia coli strain SI-NP020]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=71509 FFK26_RS05630 WP_001130207.1 1149823..1150338(+) (luxS) [Escherichia coli strain SI-NP020]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment