Detailed information NTG0715080

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: NQZ88_RS09865
• Genome accession: NZ_CP102152
• Coordinates: 1986227..1987594 (-)
• Length: 455 a.a.
• NCBI ID: WP_024405405.1
• Uniprot ID: A0AAP6A8X6
• Organism: Streptococcus suis strain DNS11
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1987941..1988414	1986227..1987594	flank	347

Gene organization within MGE regions

Location: 1986227..1988414

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NQZ88_RS09865 (NQZ88_09865)	radA	1986227..1987594 (-)	1368	WP_024405405.1	DNA repair protein RadA	Machinery gene
NQZ88_RS09870 (NQZ88_09870)	-	1987615..1987800 (-)	186	WP_257116201.1	histidine phosphatase family protein	-
NQZ88_RS09875 (NQZ88_09875)	tnpA	1987941..1988414 (-)	474	WP_024378560.1	IS200/IS605 family transposase	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 49891.39 Da
• Isoelectric Point: 6.1911

>NTDB_id=715080 NQZ88_RS09865 WP_024405405.1 1986227..1987594(-) (radA) [Streptococcus suis strain DNS11]
MTIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKMPKEITVIGVTTIGEVLQKVFN

Nucleotide

• Length: 1368 bp

>NTDB_id=715080 NQZ88_RS09865 WP_024405405.1 1986227..1987594(-) (radA) [Streptococcus suis strain DNS11]
ATGACCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCCAAGTACCTGGGCCGTTGTCC
CAACTGTGGCTCCTGGTCTTCCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTCAAGAACGAGCGGGTCAGCCTGACAGGTG
AGAAGACGCGCCCTATGAAACTCAATGAAGTTTCCTCTATTCAAGTGGCTCGTACCAAGACCAACATGGAGGAGTTCAAC
CGAGTCCTCGGTGGCGGCGTGGTGCCGGGCAGTCTGGTCCTGATCGGAGGCGATCCAGGGATTGGGAAGTCCACCTTGCT
CCTGCAAGTATCCACTCAGCTGTCTACCATTGGCACCGTCCTCTATGTGTCGGGGGAAGAGTCTGCCCAGCAGATTAAGT
TGCGAGCGGAACGCTTGGGCGACATCGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAAATCAAGCCAGATTTCCTGATTATCGATTCAATCCAGACCATCATGAGTCCTGACATCTCCAGCGTGCAAGG
CTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAACTCATGCAGATTGCCAAGACCAACAACATCGCAACCTTTATCGTCG
GCCACATGACCAAGGAAGGAACCCTAGCTGGACCGCGGACCTTGGAGCATATGGTGGATACTGTTCTCTATTTTGAGGGC
GAGCGGCAGCACACCTTTCGTATCTTGCGGGCGGTCAAAAACCGTTTTGGCTCTACCAACGAAATCGGCATTTTTGAAAT
GCAGTCGCAGGGCTTGGTCGAAGTTCTCAATCCAAGTGAGGTCTTTCTGGAAGAGCGTTTGGACGGGGCGACAGGCTCTG
CTATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCCGAAGTGCAGGCTCTGGTGACGCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGACTGGATTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGACGCCTACCTCAAGTCAGCAGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTGGCAGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGATAAGCCAACCAACCCACAAGAGTGCTTTATAGGCGAAATCGGTCTGACAGGGGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAATTGGGCTTTACTAAGGTCTATGCCCCAAAAAA
TTCCCTGACAGGTATCAAGATGCCCAAGGAAATCACCGTTATCGGCGTGACCACCATTGGCGAAGTCTTGCAGAAAGTAT
TCAACTGA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (10-37)

• AAA domain (AAA_25) (64-220)

• Subunit ChlI of Mg-chelatase (ChlI) (363-427)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus mitis NCTC 12261	91.372	99.341	0.908
radA	Streptococcus pneumoniae D39	91.15	99.341	0.905
radA	Streptococcus pneumoniae R6	91.15	99.341	0.905
radA	Streptococcus pneumoniae Rx1	91.15	99.341	0.905
radA	Streptococcus pneumoniae TIGR4	91.15	99.341	0.905
radA	Streptococcus mitis SK321	90.929	99.341	0.903
radA	Bacillus subtilis subsp. subtilis str. 168	62.693	99.56	0.624