Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   NQZ88_RS09025 Genome accession   NZ_CP102152
Coordinates   1804599..1806389 (-) Length   596 a.a.
NCBI ID   WP_024381045.1    Uniprot ID   A0A075SJ14
Organism   Streptococcus suis strain DNS11     
Function   internalize XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1802730..1847498 1804599..1806389 within 0


Gene organization within MGE regions


Location: 1802730..1847498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ88_RS09020 (NQZ88_09020) - 1803215..1804213 (-) 999 WP_002942324.1 ABC transporter ATP-binding protein -
  NQZ88_RS09025 (NQZ88_09025) oppA 1804599..1806389 (-) 1791 WP_024381045.1 oligopeptide ABC transporter substrate-binding protein Regulator
  NQZ88_RS09030 (NQZ88_09030) pbp3 1806602..1807843 (+) 1242 WP_023371474.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  NQZ88_RS09035 (NQZ88_09035) sufB 1808096..1809511 (-) 1416 WP_002938151.1 Fe-S cluster assembly protein SufB -
  NQZ88_RS09040 (NQZ88_09040) sufU 1809861..1810301 (-) 441 WP_012775691.1 Fe-S cluster assembly sulfur transfer protein SufU -
  NQZ88_RS09045 (NQZ88_09045) - 1810288..1811511 (-) 1224 WP_012027766.1 cysteine desulfurase -
  NQZ88_RS09050 (NQZ88_09050) sufD 1811515..1812777 (-) 1263 WP_012775333.1 Fe-S cluster assembly protein SufD -
  NQZ88_RS09055 (NQZ88_09055) sufC 1812794..1813567 (-) 774 WP_074389527.1 Fe-S cluster assembly ATPase SufC -
  NQZ88_RS09060 (NQZ88_09060) - 1814120..1815292 (-) 1173 WP_012027769.1 glycosyltransferase family 4 protein -
  NQZ88_RS09065 (NQZ88_09065) mecA 1815289..1816011 (-) 723 WP_012775334.1 adaptor protein MecA Regulator
  NQZ88_RS09070 (NQZ88_09070) - 1816139..1816975 (-) 837 WP_012027770.1 undecaprenyl-diphosphate phosphatase -
  NQZ88_RS09075 (NQZ88_09075) - 1817102..1818667 (+) 1566 WP_024405930.1 ABC transporter substrate-binding protein/permease -
  NQZ88_RS09080 (NQZ88_09080) - 1818660..1819403 (+) 744 WP_024389055.1 amino acid ABC transporter ATP-binding protein -
  NQZ88_RS09085 (NQZ88_09085) - 1819528..1819737 (-) 210 WP_009910800.1 hypothetical protein -
  NQZ88_RS09090 (NQZ88_09090) - 1819823..1820725 (-) 903 WP_012027774.1 SPFH domain-containing protein -
  NQZ88_RS09095 (NQZ88_09095) ilvA 1820735..1821985 (-) 1251 WP_002937416.1 threonine ammonia-lyase IlvA -
  NQZ88_RS09100 (NQZ88_09100) ilvC 1822268..1823290 (-) 1023 WP_024405928.1 ketol-acid reductoisomerase -
  NQZ88_RS09105 (NQZ88_09105) ilvN 1823431..1823907 (-) 477 WP_009910805.1 acetolactate synthase small subunit -
  NQZ88_RS09110 (NQZ88_09110) - 1823900..1825603 (-) 1704 WP_012775336.1 acetolactate synthase large subunit -
  NQZ88_RS09115 (NQZ88_09115) - 1825828..1826880 (+) 1053 WP_074389529.1 bifunctional glycosyltransferase family 2/GtrA family protein -
  NQZ88_RS09120 (NQZ88_09120) - 1826867..1827805 (+) 939 WP_012027778.1 phosphodiester glycosidase family protein -
  NQZ88_RS09125 (NQZ88_09125) - 1827780..1828196 (+) 417 WP_012775337.1 hypothetical protein -
  NQZ88_RS09130 (NQZ88_09130) - 1828447..1830168 (+) 1722 WP_074389404.1 IS1634 family transposase -
  NQZ88_RS09135 (NQZ88_09135) ilvD 1830505..1832220 (+) 1716 WP_002937428.1 dihydroxy-acid dehydratase -
  NQZ88_RS09140 (NQZ88_09140) - 1832271..1832666 (+) 396 WP_012027779.1 DUF6176 family protein -
  NQZ88_RS09145 (NQZ88_09145) - 1832685..1833026 (-) 342 WP_012027780.1 metal-sulfur cluster assembly factor -
  NQZ88_RS09150 (NQZ88_09150) - 1833117..1833570 (-) 454 Protein_1759 pyridoxamine 5'-phosphate oxidase family protein -
  NQZ88_RS10810 rpsI 1833884..1833958 (-) 75 Protein_1760 30S ribosomal protein S9 -
  NQZ88_RS09155 (NQZ88_09155) - 1834083..1835333 (-) 1251 WP_074389530.1 PIN-like domain-containing protein -
  NQZ88_RS09160 (NQZ88_09160) - 1835536..1836408 (+) 873 WP_013851450.1 hypothetical protein -
  NQZ88_RS09165 (NQZ88_09165) - 1836423..1836893 (+) 471 WP_024405913.1 hypothetical protein -
  NQZ88_RS09170 (NQZ88_09170) - 1836981..1838300 (+) 1320 WP_074389532.1 FtsK/SpoIIIE domain-containing protein -
  NQZ88_RS09175 (NQZ88_09175) - 1838390..1838704 (+) 315 WP_024405911.1 hypothetical protein -
  NQZ88_RS09180 (NQZ88_09180) - 1838745..1839134 (+) 390 WP_013851447.1 hypothetical protein -
  NQZ88_RS09185 (NQZ88_09185) - 1839297..1840091 (+) 795 WP_024395353.1 Rep protein -
  NQZ88_RS09190 (NQZ88_09190) - 1840098..1840367 (+) 270 WP_024405909.1 helix-turn-helix domain-containing protein -
  NQZ88_RS09195 (NQZ88_09195) xerC 1840410..1841630 (+) 1221 WP_024395351.1 tyrosine recombinase XerC -
  NQZ88_RS09200 (NQZ88_09200) rpsI 1841738..1842130 (-) 393 WP_002942223.1 30S ribosomal protein S9 -
  NQZ88_RS09205 (NQZ88_09205) rplM 1842150..1842596 (-) 447 WP_002876943.1 50S ribosomal protein L13 -
  NQZ88_RS09210 (NQZ88_09210) - 1843061..1843924 (-) 864 WP_257116194.1 DegV family protein -
  NQZ88_RS09215 (NQZ88_09215) - 1843921..1844442 (-) 522 WP_074389535.1 NYN domain-containing protein -
  NQZ88_RS09220 (NQZ88_09220) rlmB 1844443..1845171 (-) 729 WP_024385874.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  NQZ88_RS09225 (NQZ88_09225) - 1845307..1845696 (+) 390 WP_044684509.1 DUF1761 domain-containing protein -
  NQZ88_RS09230 (NQZ88_09230) - 1845771..1846739 (+) 969 WP_044693132.1 aromatic acid exporter family protein -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 65681.70 Da        Isoelectric Point: 4.6364

>NTDB_id=715076 NQZ88_RS09025 WP_024381045.1 1804599..1806389(-) (oppA) [Streptococcus suis strain DNS11]
MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPAEVKQDGTAVADAQLKYAWVSPTTSSGLLIDELTENTTDST
FGGMVDISMFGYDGERKLDDSGLAKAEFDVKGKKITVSLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGIRFDDKFLN
IEGMQEFVDGKASDISGIKKVDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEYFFKGTKPKTSSLKIDIVSPDTIVSEMKAGNYDIAEMPVDQLDSYKDASNLNIVGQLESSYEYI
SFNFGKYDEAAGKNVMDENAKMNDVKLRQAIAYAIDTKTAGKSLYNGLYHPAKSLIISFFGDIHDSELEGYSYNPEKAKK
LLDEAGYKDVDGDGIREGKDGKAFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEGKSFYNSVQANDAAID
MYAGGWSTGYDPNPSGLWGPIAAFNMSRFVSDENTKLLEAISSAESFDDKKNVENYKAWQKYAHEQAFAIPTFESEKITA
VNKRVKSYDTKYGSASGTGLAYEGIELTADKGVVAE

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=715076 NQZ88_RS09025 WP_024381045.1 1804599..1806389(-) (oppA) [Streptococcus suis strain DNS11]
ATGAAAAAGACAACGAAACTTTTTGCACTTGCAGGTGTGACTCTCCTTTCAGCATCTGTTCTTGCAGCATGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCCGGCTGAAGTAAAACAAGATGGAACAGCAGTCGCAGATGCTCAAT
TGAAATATGCTTGGGTATCTCCTACAACTTCATCAGGTCTTTTAATTGATGAGTTGACTGAGAATACTACTGATTCAACA
TTTGGTGGTATGGTTGATATTTCAATGTTCGGTTACGACGGAGAACGTAAGTTGGACGACTCAGGTCTTGCCAAGGCTGA
ATTTGATGTAAAAGGCAAGAAAATCACAGTCAGCTTGACTGGTAAGGATTACAAGTGGTCAGATGGTGAGCCATTCACAA
TCAACGACTACATCTTTACAATTAAGTCGATGGCAAGCAAAGACTATACAGGTATTCGTTTTGATGATAAATTCTTGAAT
ATTGAAGGTATGCAAGAATTTGTTGATGGAAAAGCATCAGACATCTCTGGTATTAAGAAAGTTGATGACTATACAGTAGA
ATTAACTGTAAAAGAAATGTCACCTTCAATGATGTATGCAGGTGGTGATGTCCCAGCCTATATCCAACCAGAACACATCT
ATAAAGACATCCCTGTTGCAGACTGGGAAAAGAGCGAATACTCACGTACTGCGAAGCTTGTTGGTATGGGGCCGTGGAAG
ATTAAGGAAATCGTCAATGGTGAGTCTATCACTTACGTACCAAACGAATACTTCTTCAAGGGTACGAAACCAAAAACAAG
CTCATTGAAGATTGACATCGTATCTCCTGATACTATTGTTTCTGAAATGAAAGCGGGGAATTATGATATCGCAGAAATGC
CGGTTGATCAGTTAGATTCATATAAGGATGCTTCTAACTTGAATATCGTTGGTCAGTTAGAGTCGTCTTATGAGTATATC
TCGTTTAATTTTGGTAAATATGACGAAGCAGCTGGTAAGAACGTTATGGATGAAAATGCCAAGATGAATGATGTGAAACT
TCGTCAAGCGATTGCCTATGCGATTGATACCAAGACAGCTGGTAAGTCATTATACAACGGTCTTTACCACCCTGCAAAAT
CATTGATTATCTCATTCTTCGGCGATATTCATGATTCAGAGTTGGAAGGCTATTCATACAATCCTGAAAAAGCGAAAAAG
CTTTTGGATGAAGCTGGCTACAAAGATGTAGATGGTGATGGTATCCGTGAAGGCAAAGATGGTAAGGCATTCAAGATTAC
CTTTGCGGCTCGTAAACGTACTGAAGCTAACGAAGCGCTTGTACAACAATACATTGCTTGGTGGAAAGAAGTTGGCTTGA
ATGTCGAACTTTACACAGGACGTACAGTTGAAGGTAAGTCGTTCTATAACTCAGTTCAGGCTAATGATGCTGCTATTGAT
ATGTATGCTGGTGGATGGTCAACAGGTTACGATCCAAACCCAAGTGGTCTATGGGGGCCTATCGCAGCCTTCAATATGTC
ACGTTTCGTGTCCGATGAAAACACCAAGTTATTGGAAGCTATCAGCTCAGCAGAGTCGTTTGATGATAAGAAAAACGTTG
AGAACTATAAGGCTTGGCAAAAATATGCTCACGAGCAAGCATTTGCTATTCCAACGTTTGAGTCAGAAAAAATTACTGCT
GTTAATAAACGTGTGAAAAGCTATGATACAAAATACGGCTCAGCTTCGGGTACAGGTCTTGCTTATGAGGGTATCGAATT
GACAGCTGATAAGGGTGTAGTGGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(103-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075SJ14

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

99.832

100

0.998