Detailed information NTG0715047

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PQH37_RS06200
• Genome accession: NZ_CP116948
• Coordinates: 1278560..1279552 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CUVET21-PYO5
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1273560..1284552

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PQH37_RS06170 (PQH37_06150)	ispD	1273621..1274331 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PQH37_RS06175 (PQH37_06155)	ispF	1274331..1274810 (+)	480	WP_001219238.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PQH37_RS06180 (PQH37_06160)	truD	1274807..1275856 (+)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
PQH37_RS06185 (PQH37_06165)	surE	1275837..1276598 (+)	762	WP_001350156.1	5'/3'-nucleotidase SurE	-
PQH37_RS06190 (PQH37_06170)	pcm	1276592..1277218 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
PQH37_RS06195 (PQH37_06175)	nlpD	1277403..1278497 (+)	1095	WP_306217602.1	murein hydrolase activator NlpD	-
PQH37_RS06200 (PQH37_06180)	rpoS	1278560..1279552 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
PQH37_RS06205 (PQH37_06185)	-	1279723..1280274 (-)	552	WP_001179443.1	flavodoxin family protein	-
PQH37_RS06210 (PQH37_06190)	-	1280499..1281542 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
PQH37_RS06215 (PQH37_06195)	ygbN	1281685..1283049 (-)	1365	WP_000104433.1	GntP family transporter	-
PQH37_RS06220 (PQH37_06200)	ygbM	1283138..1283914 (-)	777	WP_001136915.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=715047 PQH37_RS06200 WP_000081550.1 1278560..1279552(+) (rpoS) [Escherichia coli strain CUVET21-PYO5]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=715047 PQH37_RS06200 WP_000081550.1 1278560..1279552(+) (rpoS) [Escherichia coli strain CUVET21-PYO5]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715