Detailed information NTG0715026

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: NQZ90_RS09870
• Genome accession: NZ_CP102148
• Coordinates: 2033391..2034758 (-)
• Length: 455 a.a.
• NCBI ID: WP_248042678.1
• Uniprot ID: A0AAW9DF31
• Organism: Streptococcus suis strain DNC15
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	2032738..2033202	2033391..2034758	flank	189

Gene organization within MGE regions

Location: 2032738..2034758

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NQZ90_RS09865 (NQZ90_09865)	tnpA	2032738..2033202 (-)	465	WP_257110234.1	IS200/IS605-like element ISSsu4 family transposase	-
NQZ90_RS09870 (NQZ90_09870)	radA	2033391..2034758 (-)	1368	WP_248042678.1	DNA repair protein RadA	Machinery gene

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 49889.41 Da
• Isoelectric Point: 6.1911

>NTDB_id=715026 NQZ90_RS09870 WP_248042678.1 2033391..2034758(-) (radA) [Streptococcus suis strain DNC15]
MTIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEIMVIGVTTIGEVLQKVFN

Nucleotide

• Length: 1368 bp

>NTDB_id=715026 NQZ90_RS09870 WP_248042678.1 2033391..2034758(-) (radA) [Streptococcus suis strain DNC15]
ATGACCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCCAAGTATCTGGGTCGTTGCCC
CAACTGTGGCTCCTGGTCTTCCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTTAAGAACGAGCGGGTCAGCCTGACAGGTG
AGAAGACCCGACCTATGAAGCTCAATGAAGTGTCGTCCATTCAAGTGGCCCGCACTAAGACCAATATGGAGGAGTTTAAC
CGCGTCTTAGGTGGTGGAGTGGTGCCGGGCAGTCTGGTCCTGATCGGAGGCGATCCAGGGATTGGCAAGTCCACCTTGCT
CCTGCAAGTATCCACTCAACTGTCTACAATTGGCACGGTCCTCTATGTGTCGGGGGAGGAATCTGCCCAGCAGATTAAGC
TCCGTGCCGAGCGTTTGGGCGACATTGACAGTGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACTGAG
ATTGAGAAAATCAAGCCAGATTTCCTGATTATCGATTCGATCCAGACCATTATGAGCCCTGATATCTCCAGTGTGCAAGG
ATCTGTCAGTCAGGTCCGTGAAGTGACCAATGAACTTATGCAGATTGCCAAGACCAACAATATCGCAACCTTTATCGTCG
GCCACATGACCAAGGAAGGAACCCTGGCTGGGCCGCGGACCTTGGAGCACATGGTGGACACCGTTCTCTATTTTGAAGGC
GAGCGGCAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGCTCCACCAATGAAATCGGCATTTTTGAAAT
GCAGTCGCAGGGTTTGGTCGAAGTCCTCAATCCAAGTGAGGTCTTTCTGGAAGAGCGTCTGGACGGGGCGACTGGCTCGG
CTATTGTCGTGACCATGGAGGGCACTCGCCCTATCCTTGCTGAAGTGCAGGCCCTGGTGACGCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGATTGGACTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCCGGTCTGCT
CCTCCAAAACCAAGATGCCTACCTCAAATCAGCAGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTAGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGACAAGCCAACCAACCCACAAGAGTGCTTTATAGGCGAAATCGGTCTGACAGGGGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAATTGGGCTTTACCAAGGTCTATGCCCCCAAAAA
TTCCCTGACAGGTATCAAGGTGCCCAAGGAAATCATGGTTATCGGCGTGACCACCATTGGCGAAGTCTTACAGAAAGTAT
TCAACTGA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (10-37)

• AAA domain (AAA_25) (64-220)

• Subunit ChlI of Mg-chelatase (ChlI) (363-427)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus mitis NCTC 12261	91.372	99.341	0.908
radA	Streptococcus pneumoniae D39	91.15	99.341	0.905
radA	Streptococcus pneumoniae R6	91.15	99.341	0.905
radA	Streptococcus pneumoniae Rx1	91.15	99.341	0.905
radA	Streptococcus pneumoniae TIGR4	91.15	99.341	0.905
radA	Streptococcus mitis SK321	90.929	99.341	0.903
radA	Bacillus subtilis subsp. subtilis str. 168	62.693	99.56	0.624