Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PQH37_RS00245 Genome accession   NZ_CP116948
Coordinates   46474..46950 (-) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli strain CUVET21-PYO5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 41474..51950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQH37_RS00205 (PQH37_00210) yicL 41500..42423 (-) 924 WP_000535950.1 carboxylate/amino acid/amine transporter -
  PQH37_RS00210 (PQH37_00215) - 42590..43087 (-) 498 WP_000509811.1 hypothetical protein -
  PQH37_RS00215 (PQH37_00220) - 43680..44525 (-) 846 Protein_42 DUF4942 domain-containing protein -
  PQH37_RS00220 (PQH37_00225) - 44607..44804 (-) 198 WP_000839274.1 DUF957 domain-containing protein -
  PQH37_RS00225 (PQH37_00230) - 44816..45295 (-) 480 WP_000988603.1 DUF5983 family protein -
  PQH37_RS00230 (PQH37_00235) cbtA 45292..45666 (-) 375 WP_021538823.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  PQH37_RS00235 (PQH37_00240) - 45755..46111 (-) 357 WP_077769386.1 type IV toxin-antitoxin system YeeU family antitoxin -
  PQH37_RS00240 (PQH37_00245) - 46184..46405 (-) 222 WP_000692326.1 DUF987 domain-containing protein -
  PQH37_RS00245 (PQH37_00250) radC 46474..46950 (-) 477 WP_001186726.1 JAB domain-containing protein Machinery gene
  PQH37_RS00250 (PQH37_00255) - 46965..47450 (-) 486 WP_021544155.1 antirestriction protein -
  PQH37_RS00255 (PQH37_00260) - 47543..48361 (-) 819 WP_021538859.1 DUF932 domain-containing protein -
  PQH37_RS00260 (PQH37_00265) - 48451..48684 (-) 234 WP_001278287.1 DUF905 family protein -
  PQH37_RS00265 (PQH37_00270) - 48690..49367 (-) 678 WP_021538820.1 hypothetical protein -
  PQH37_RS00270 (PQH37_00275) - 49515..50195 (-) 681 WP_001555671.1 helix-turn-helix transcriptional regulator -
  PQH37_RS00275 (PQH37_00280) - 50398..51282 (-) 885 WP_021538819.1 GTPase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=715024 PQH37_RS00245 WP_001186726.1 46474..46950(-) (radC) [Escherichia coli strain CUVET21-PYO5]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=715024 PQH37_RS00245 WP_001186726.1 46474..46950(-) (radC) [Escherichia coli strain CUVET21-PYO5]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAGGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCGGAACACGGCCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392