Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   NQZ90_RS08910 Genome accession   NZ_CP102148
Coordinates   1817305..1819095 (-) Length   596 a.a.
NCBI ID   WP_041179406.1    Uniprot ID   -
Organism   Streptococcus suis strain DNC15     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1812305..1824095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ90_RS08885 (NQZ90_08885) - 1812625..1812990 (-) 366 WP_105243651.1 Asp23/Gls24 family envelope stress response protein -
  NQZ90_RS08890 (NQZ90_08890) - 1813112..1814014 (-) 903 WP_002942329.1 ABC transporter permease -
  NQZ90_RS08895 (NQZ90_08895) opp4B 1814028..1814984 (-) 957 WP_015647351.1 oligopeptide ABC transporter permease -
  NQZ90_RS08900 (NQZ90_08900) - 1814986..1815927 (-) 942 WP_002938145.1 ATP-binding cassette domain-containing protein -
  NQZ90_RS08905 (NQZ90_08905) - 1815930..1816928 (-) 999 WP_002942324.1 ABC transporter ATP-binding protein -
  NQZ90_RS08910 (NQZ90_08910) oppA 1817305..1819095 (-) 1791 WP_041179406.1 oligopeptide ABC transporter substrate-binding protein Regulator
  NQZ90_RS08915 (NQZ90_08915) pbp3 1819308..1820549 (+) 1242 WP_257110209.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  NQZ90_RS08920 (NQZ90_08920) sufB 1820783..1822198 (-) 1416 WP_172107598.1 Fe-S cluster assembly protein SufB -
  NQZ90_RS08925 (NQZ90_08925) sufU 1822510..1822950 (-) 441 WP_257110210.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 65647.63 Da        Isoelectric Point: 4.5719

>NTDB_id=715022 NQZ90_RS08910 WP_041179406.1 1817305..1819095(-) (oppA) [Streptococcus suis strain DNC15]
MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPAEVKQDGTAVSDAQLKYAFVSPTTSSGLLIDELTENTTDST
FGGMVDISMFGYDGDRKLDDSGLAKAEFDVKGKKITVSLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGIRFDDKFLN
IEGMQEFVDGKASDISGIKKVDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEYFFKGTKPKTSSLKIDIVSPDTIVSEMKAGNYDIADMPVDQLDSYKKASNLNIVGSLDSAYEYI
SFNFGKYDEAAGKNVMDENAKMNDVKLRQAIAYAIDTKTAGESLYNGLYHPAKSLIISFFGDIHDSELEGYSYNPEKAKK
LLDEAGYKDVDGDGIREGKDGKAFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEGKSFYNSVQANDAAID
MYAGGWSTGYDPNPSGLWGPIAAFNMSRFVSDENTKLLEAISSTESFDDKKNVENYKAWQKYAYEQAFAIPTFESESIVA
LNKRVKNYDTNYGSASGKGIALENIELTADKGVVAE

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=715022 NQZ90_RS08910 WP_041179406.1 1817305..1819095(-) (oppA) [Streptococcus suis strain DNC15]
ATGAAAAAGACAACGAAACTTTTTGCACTTGCAGGTGTGACTCTCCTTTCAGCATCTGTTCTTGCAGCATGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCCAGCTGAGGTAAAACAAGACGGAACAGCAGTGTCTGACGCTCAGT
TGAAATATGCGTTTGTATCACCAACGACTTCATCAGGTCTCTTGATTGATGAGTTGACTGAAAATACGACTGATTCAACA
TTTGGTGGTATGGTTGACATTTCAATGTTCGGTTACGATGGAGATCGTAAGTTGGACGACTCAGGTCTTGCTAAGGCTGA
ATTTGATGTGAAAGGTAAGAAAATCACAGTCAGCTTGACTGGTAAGGATTACAAGTGGTCAGATGGTGAGCCATTCACAA
TCAACGACTACATCTTTACAATTAAGTCAATGGCAAGCAAAGACTATACAGGCATTCGTTTTGATGATAAATTCTTGAAC
ATTGAAGGTATGCAAGAATTTGTTGATGGAAAAGCATCAGACATCTCTGGTATTAAGAAAGTTGATGACTATACAGTAGA
ATTAACTGTAAAAGAAATGTCACCTTCAATGATGTATGCAGGTGGTGATGTCCCAGCCTATATCCAACCAGAACACATCT
ATAAAGACATCCCTGTTGCAGACTGGGAAAAGAGCGAATACTCACGTACTGCGAAGCTTGTTGGTATGGGCCCGTGGAAG
ATTAAAGAAATTGTTAATGGTGAGTCTATTACTTACGTACCAAACGAATACTTCTTCAAGGGTACGAAACCAAAAACAAG
CTCATTGAAGATTGACATCGTATCTCCTGATACTATTGTTTCTGAAATGAAAGCGGGGAATTATGATATTGCTGACATGC
CAGTAGATCAGTTGGATTCATATAAAAAAGCATCTAACTTGAATATTGTTGGTTCTTTGGACTCGGCTTATGAATACATT
TCATTTAATTTTGGTAAATATGACGAAGCAGCCGGTAAGAACGTTATGGACGAAAATGCCAAGATGAATGATGTGAAGCT
TCGTCAAGCAATTGCCTATGCGATTGATACTAAGACAGCTGGTGAGTCATTGTACAATGGTCTTTACCACCCTGCAAAAT
CATTGATTATCTCATTCTTCGGCGATATTCATGATTCAGAGTTGGAAGGCTATTCATACAATCCTGAAAAAGCGAAAAAG
CTTTTGGATGAAGCTGGCTACAAAGATGTAGATGGCGATGGTATCCGTGAAGGCAAAGATGGTAAGGCATTCAAGATTAC
CTTTGCGGCCCGTAAACGTACTGAAGCTAACGAAGCGCTCGTACAACAATACATTGCTTGGTGGAAAGAAGTTGGCTTGA
ATGTCGAACTTTACACAGGACGTACAGTTGAAGGTAAGTCGTTCTATAACTCAGTTCAGGCTAATGATGCTGCTATTGAT
ATGTATGCTGGTGGATGGTCAACAGGTTACGATCCAAACCCAAGTGGTCTATGGGGACCTATCGCAGCCTTCAATATGTC
ACGTTTCGTGTCTGATGAAAACACTAAGTTATTGGAAGCAATTAGTTCGACAGAATCATTTGACGACAAGAAAAATGTTG
AGAACTATAAGGCTTGGCAAAAATATGCTTACGAACAAGCATTTGCTATTCCAACATTTGAATCTGAGTCAATTGTAGCA
CTTAACAAACGTGTGAAAAACTATGACACTAACTACGGTTCAGCTTCAGGTAAAGGTATCGCTCTTGAGAATATCGAACT
TACTGCTGATAAAGGTGTAGTGGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(103-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

96.477

100

0.965