Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EL389_RS05670 Genome accession   NZ_AP018808
Coordinates   1159916..1160545 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain E2865     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1154916..1165545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL389_RS05650 (E2865_01101) ycbZ 1155318..1157078 (-) 1761 WP_000156528.1 Lon protease family protein -
  EL389_RS05655 (E2865_01102) matP 1157264..1157716 (+) 453 WP_000877167.1 macrodomain Ter protein MatP -
  EL389_RS05660 (E2865_01103) ompA 1157791..1158831 (-) 1041 WP_000750416.1 porin OmpA -
  EL389_RS05665 (E2865_01104) sulA 1159188..1159697 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  EL389_RS05670 (E2865_01105) sxy/tfoX 1159916..1160545 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EL389_RS05675 (E2865_01106) yccS 1160508..1162670 (-) 2163 WP_000875023.1 YccS family putative transporter -
  EL389_RS05680 (E2865_01107) yccF 1162680..1163126 (-) 447 WP_001261235.1 YccF domain-containing protein -
  EL389_RS05685 (E2865_01108) helD 1163249..1165303 (+) 2055 WP_001297106.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=71501 EL389_RS05670 WP_000839153.1 1159916..1160545(+) (sxy/tfoX) [Escherichia coli strain E2865]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=71501 EL389_RS05670 WP_000839153.1 1159916..1160545(+) (sxy/tfoX) [Escherichia coli strain E2865]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment