Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   NQZ90_RS02940 Genome accession   NZ_CP102148
Coordinates   598740..599543 (+) Length   267 a.a.
NCBI ID   WP_002935843.1    Uniprot ID   -
Organism   Streptococcus suis strain DNC15     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 593740..604543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ90_RS02915 (NQZ90_02915) - 594169..594867 (-) 699 WP_013730248.1 amino acid ABC transporter permease -
  NQZ90_RS02920 (NQZ90_02920) - 594882..595721 (-) 840 WP_248041110.1 transporter substrate-binding domain-containing protein -
  NQZ90_RS02925 (NQZ90_02925) - 595732..596493 (-) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  NQZ90_RS02930 (NQZ90_02930) micA 596687..597391 (+) 705 WP_002935840.1 response regulator YycF Regulator
  NQZ90_RS02935 (NQZ90_02935) micB 597384..598733 (+) 1350 WP_002935841.1 cell wall metabolism sensor histidine kinase VicK Regulator
  NQZ90_RS02940 (NQZ90_02940) vicX 598740..599543 (+) 804 WP_002935843.1 MBL fold metallo-hydrolase Regulator
  NQZ90_RS02945 (NQZ90_02945) vga(F) 599797..601182 (+) 1386 WP_257110346.1 ABC-F type ribosomal protection protein Vga(F) -
  NQZ90_RS02950 (NQZ90_02950) pbp2b 601274..603346 (+) 2073 WP_257110347.1 penicillin-binding protein PBP2B -
  NQZ90_RS02955 (NQZ90_02955) recR 603355..603951 (+) 597 WP_014637682.1 recombination mediator RecR -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29659.75 Da        Isoelectric Point: 5.7755

>NTDB_id=715002 NQZ90_RS02940 WP_002935843.1 598740..599543(+) (vicX) [Streptococcus suis strain DNC15]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=715002 NQZ90_RS02940 WP_002935843.1 598740..599543(+) (vicX) [Streptococcus suis strain DNC15]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATTTTAGTGGATGCTGGCTTATCAGGGAAAAAGATCACCAGTCTTTTGGCGGAAATTGACCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGCATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGACATTGAGTCCTTTGGTGTCAGTCATGATGCGGCCTGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCTTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATATTGAAATTTTGCGCTCGGGTTCTTACTCTTGGAACCTCAA
ACAACGGATTCTATCCGATAAGGGACATCTTTGTAACGAAGATGGAGCTGATGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAGGTCTATGATACCTCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.154

100

0.772