Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   NQZ90_RS01080 Genome accession   NZ_CP102148
Coordinates   205405..206118 (+) Length   237 a.a.
NCBI ID   WP_012774930.1    Uniprot ID   A0A142UPI2
Organism   Streptococcus suis strain DNC15     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 200405..211118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ90_RS01070 (NQZ90_01070) treC 201470..203095 (-) 1626 WP_257110287.1 alpha,alpha-phosphotrehalase -
  NQZ90_RS01075 (NQZ90_01075) treP 203176..205170 (-) 1995 WP_257110288.1 PTS system trehalose-specific EIIBC component -
  NQZ90_RS01080 (NQZ90_01080) treR 205405..206118 (+) 714 WP_012774930.1 trehalose operon repressor Regulator
  NQZ90_RS01085 (NQZ90_01085) - 206176..206487 (+) 312 WP_002935948.1 hypothetical protein -
  NQZ90_RS01090 (NQZ90_01090) - 206484..207032 (+) 549 WP_002935945.1 CvpA family protein -
  NQZ90_RS01095 (NQZ90_01095) - 207526..209859 (+) 2334 WP_024389716.1 endonuclease MutS2 -
  NQZ90_RS01100 (NQZ90_01100) - 210025..210405 (+) 381 WP_024414342.1 DUF1310 family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27200.07 Da        Isoelectric Point: 6.7422

>NTDB_id=714991 NQZ90_RS01080 WP_012774930.1 205405..206118(+) (treR) [Streptococcus suis strain DNC15]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=714991 NQZ90_RS01080 WP_012774930.1 205405..206118(+) (treR) [Streptococcus suis strain DNC15]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCACTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCGATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAACAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142UPI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515