Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   NQZ91_RS09555 Genome accession   NZ_CP102145
Coordinates   1898670..1900769 (+) Length   699 a.a.
NCBI ID   WP_257117439.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS20     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1893670..1905769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ91_RS09535 (NQZ91_09535) - 1894079..1896742 (+) 2664 WP_257117435.1 helicase HerA domain-containing protein -
  NQZ91_RS09540 (NQZ91_09540) - 1896739..1897338 (+) 600 WP_257117436.1 HNH/ENDO VII family nuclease -
  NQZ91_RS09545 (NQZ91_09545) - 1897335..1897745 (+) 411 WP_257117437.1 SMI1/KNR4 family protein -
  NQZ91_RS09550 (NQZ91_09550) - 1897742..1898152 (+) 411 WP_172094655.1 peptide deformylase -
  NQZ91_RS09555 (NQZ91_09555) clpC 1898670..1900769 (+) 2100 WP_257117439.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  NQZ91_RS09560 (NQZ91_09560) malQ 1900972..1902480 (+) 1509 WP_172059913.1 4-alpha-glucanotransferase -
  NQZ91_RS09565 (NQZ91_09565) glgP 1902473..1904737 (+) 2265 WP_257117440.1 glycogen/starch/alpha-glucan family phosphorylase -

Sequence

Protein


Download         Length: 699 a.a.        Molecular weight: 77206.14 Da        Isoelectric Point: 4.8291

>NTDB_id=714968 NQZ91_RS09555 WP_257117439.1 1898670..1900769(+) (clpC) [Streptococcus suis strain DNS20]
MNNNFNNFNNMDDIFNQLMGNMGGYSTERRRYSINGREVTPEEFAMYRQTGRLPQTEEVAQTQVKGQIKSDGILAKLGRN
LTQDAREGKLDPVIGRNKEIQETSEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEA
GTQYRGAFEENVQNLVDEVKKAGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRNTIHK
NAALARRFNEVKVNAPSAEDTYQILKGIKPLYEAHHNIELPDEVLRAAVDYSVQYIPQRSLPDKAIDLVDVTAAHLAAQH
PVTDIQTLEAEMAEAKQLQLEAAEKEDYEKALNEKVRIDKLQKQIDNHTEQQKVVATVNDVAQAVERMTGIPVSQMGASD
IELLKELKNRLAAKVIGQDDAVEAVSRAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLALDLFGNKDAIIRLDMS
EYSDRTAVSKLIGTTAGYVGYDDNSHTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGHLTDGQGNQVNFKNTII
IATSNAGFGYGMAEGEENQDIMDRIAPFFRPEFLNRFNAVIEFKHLDKEDLKAIVELMLAQVNKTLAKKGISLEVTEAAK
DFLMEAGYDKAMGARPLRRVIESQIRDKVTDFYLDHTNVTNLLADVADNEIKIEEQTFS

Nucleotide


Download         Length: 2100 bp        

>NTDB_id=714968 NQZ91_RS09555 WP_257117439.1 1898670..1900769(+) (clpC) [Streptococcus suis strain DNS20]
ATGAACAACAATTTCAATAACTTTAACAATATGGACGACATTTTCAATCAGCTCATGGGCAACATGGGAGGCTACAGCAC
AGAACGTCGCCGTTATTCTATCAATGGGCGTGAAGTAACACCAGAAGAATTTGCTATGTACCGTCAGACTGGTCGCCTGC
CACAGACAGAAGAAGTGGCTCAAACACAGGTTAAAGGTCAGATAAAGTCAGATGGGATTTTAGCAAAATTAGGTCGCAAT
TTGACCCAAGATGCGCGTGAAGGTAAGTTGGATCCAGTCATTGGACGCAACAAGGAAATCCAAGAAACCTCTGAAATCCT
AGCTCGTCGGACTAAGAACAATCCTGTTTTGGTCGGTGATGCGGGTGTCGGAAAGACAGCGGTAGTAGAAGGCTTGGCTC
AAGCCATTGTCAACGGAGATGTCCCAGCTGCCATTAAGAACAAGGAAATCATCTCCATTGACATTTCTGGCTTGGAGGCA
GGGACCCAGTACCGCGGAGCTTTTGAGGAAAATGTGCAAAATCTTGTGGATGAAGTCAAAAAAGCAGGAAATATCATTCT
CTTCTTTGATGAAATTCATCAGATTTTGGGAGCTGGTAGCACTGGTGGGGACTCAGGTTCCAAGGGCTTAGCGGATATTC
TCAAACCAGCTCTTTCCCGTGGAGAGTTAACTGTTATCGGTGCCACTACGCAGGACGAATACCGCAACACCATTCACAAG
AACGCTGCTCTGGCTCGTCGTTTCAATGAAGTCAAGGTCAATGCTCCGTCCGCAGAGGACACCTACCAGATTTTGAAAGG
GATTAAGCCGCTTTATGAAGCCCACCACAATATTGAATTGCCAGATGAAGTCTTACGAGCTGCAGTAGATTATTCTGTCC
AATATATTCCACAGCGCAGCTTGCCTGATAAGGCTATTGACCTGGTTGATGTGACTGCTGCACATTTGGCTGCACAACAT
CCTGTGACAGATATTCAGACCTTGGAAGCAGAAATGGCTGAGGCAAAACAGTTGCAGTTGGAAGCGGCTGAGAAAGAGGA
TTATGAAAAAGCCTTGAATGAAAAGGTCCGTATTGATAAGCTACAAAAACAGATCGATAATCATACGGAGCAACAGAAAG
TGGTAGCGACTGTTAATGATGTGGCTCAGGCGGTTGAGCGGATGACAGGCATCCCAGTCTCACAAATGGGAGCTTCTGAT
ATTGAACTACTCAAGGAATTGAAAAATCGTCTGGCAGCTAAGGTTATCGGTCAAGACGATGCGGTGGAAGCAGTATCTCG
TGCCATTCGTCGAAATCGTGCAGGTTTTGATGACGGCAACCGTCCGATTGGTTCCTTCCTCTTTGTCGGTCCGACAGGTG
TGGGTAAGACAGAGTTAGCAAAACAGTTAGCGCTAGACTTGTTTGGTAACAAGGATGCCATTATCCGCCTGGATATGTCT
GAATACAGCGATCGGACAGCCGTTTCCAAGCTGATTGGGACCACAGCTGGTTATGTGGGCTACGATGACAATTCCCATAC
TTTGACCGAGCGTGTCCGCCGCAATCCGTACTCCATTGTCCTCTTGGATGAAATTGAAAAAGCTGATCCACAAGTGATTA
CTCTCCTCTTGCAAGTGCTGGATGACGGGCATTTGACAGATGGACAGGGCAATCAAGTCAACTTTAAAAATACCATTATC
ATCGCTACATCAAATGCAGGTTTTGGATATGGAATGGCAGAAGGTGAAGAAAATCAAGACATCATGGACCGCATCGCACC
ATTCTTCCGCCCAGAGTTTCTCAATCGTTTCAATGCAGTTATCGAATTCAAGCACTTGGATAAAGAAGATCTCAAAGCTA
TCGTAGAATTGATGCTGGCTCAGGTCAATAAAACACTTGCTAAAAAAGGGATTAGCTTAGAGGTGACCGAGGCTGCCAAA
GACTTCTTGATGGAAGCCGGCTATGACAAGGCAATGGGGGCTCGCCCACTCCGTCGGGTCATCGAAAGCCAAATTCGCGA
CAAGGTAACAGACTTTTATTTAGACCATACAAATGTGACAAACTTACTCGCGGATGTGGCGGATAATGAAATCAAAATTG
AAGAGCAAACCTTTTCATAA

Domains

Predicted by InterproScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(116-249)

AAA domain (Cdc48 subfamily) (AAA_2)

(441-599)

AAA lid domain (AAA_lid_9)

(257-351)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(606-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

47.801

100

0.482
  clpE Streptococcus pneumoniae Rx1

49.763

90.558

0.451
  clpE Streptococcus pneumoniae D39

49.763

90.558

0.451
  clpE Streptococcus pneumoniae R6

49.763

90.558

0.451
  clpE Streptococcus pneumoniae TIGR4

49.763

90.558

0.451
  clpE Streptococcus mutans UA159

50.079

89.986

0.451
  clpC Bacillus subtilis subsp. subtilis str. 168

45.131

92.561

0.418
  clpC Streptococcus pneumoniae Rx1

42.089

93.133

0.392
  clpC Streptococcus pneumoniae D39

42.089

93.133

0.392
  clpC Streptococcus pneumoniae TIGR4

41.935

93.133

0.391
  clpC Streptococcus mutans UA159

44.013

88.412

0.389
  clpC Streptococcus thermophilus LMD-9

43.2

89.413

0.386
  clpC Streptococcus thermophilus LMG 18311

43.04

89.413

0.385
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

43.156

88.841

0.383