Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   NQZ91_RS08410 Genome accession   NZ_CP102145
Coordinates   1677233..1677946 (+) Length   237 a.a.
NCBI ID   WP_105111742.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS20     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1672233..1682946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ91_RS08400 (NQZ91_08400) treC 1673296..1674921 (-) 1626 WP_257117327.1 alpha,alpha-phosphotrehalase -
  NQZ91_RS08405 (NQZ91_08405) treP 1675006..1677000 (-) 1995 Protein_1628 PTS system trehalose-specific EIIBC component -
  NQZ91_RS08410 (NQZ91_08410) treR 1677233..1677946 (+) 714 WP_105111742.1 trehalose operon repressor Regulator
  NQZ91_RS08415 (NQZ91_08415) zapA 1678000..1678305 (+) 306 WP_105111743.1 cell division protein ZapA -
  NQZ91_RS08420 (NQZ91_08420) - 1678308..1678853 (+) 546 WP_105111744.1 CvpA family protein -
  NQZ91_RS08425 (NQZ91_08425) - 1678885..1681218 (+) 2334 WP_257117328.1 endonuclease MutS2 -
  NQZ91_RS08430 (NQZ91_08430) - 1681305..1681958 (+) 654 WP_105122375.1 GNAT family N-acetyltransferase -
  NQZ91_RS08435 (NQZ91_08435) - 1682061..1682438 (+) 378 WP_238140697.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27372.31 Da        Isoelectric Point: 8.9261

>NTDB_id=714962 NQZ91_RS08410 WP_105111742.1 1677233..1677946(+) (treR) [Streptococcus suis strain DNS20]
MKKYQEIYNDLKEKIRTNTYPAETSLPTEQRLQEIYGVSRDTVRKALSMLTERGMIQKVQGRGSLVLKQEMLNFPVSGLT
SYQELAESLQLETKTEVVSLDQIVISSNLANLTGFEPHSKVWKVVRTRSIDGKVSVVDTDYLSADIVPTITKEIAASSIY
NYLEKTLKLDIAYAQKEITVEPTSREERELMKNEDDYLVLIKSRVYLGDTKQFQYTESKHKIDKFRFVDFARRKHSI

Nucleotide


Download         Length: 714 bp        

>NTDB_id=714962 NQZ91_RS08410 WP_105111742.1 1677233..1677946(+) (treR) [Streptococcus suis strain DNS20]
ATGAAGAAATACCAGGAAATTTACAATGACTTAAAGGAAAAAATCCGTACAAATACCTATCCTGCTGAAACCAGTCTGCC
GACCGAGCAGCGCCTGCAAGAAATTTACGGTGTCAGTCGTGATACTGTCCGCAAGGCCCTGTCTATGTTGACAGAAAGAG
GTATGATTCAGAAAGTTCAGGGCCGAGGTTCCCTAGTTCTCAAGCAAGAAATGCTGAATTTCCCTGTTTCTGGTCTGACT
TCCTACCAGGAATTGGCTGAGTCTTTGCAGCTGGAGACCAAGACAGAAGTAGTCAGCCTGGATCAGATTGTTATCAGCAG
CAACTTGGCGAATTTGACTGGGTTTGAACCCCATAGCAAGGTCTGGAAAGTTGTCCGTACACGTTCTATTGATGGCAAGG
TGTCGGTTGTGGATACTGACTACCTGTCTGCGGATATTGTGCCGACCATTACCAAGGAAATTGCTGCATCTTCCATTTAC
AATTATCTGGAGAAGACCCTCAAGCTGGATATTGCCTATGCCCAAAAGGAAATTACTGTTGAGCCGACCAGCCGTGAGGA
GCGAGAGCTCATGAAAAATGAAGATGACTATCTGGTCCTCATCAAATCCCGCGTCTATCTGGGAGATACCAAGCAATTCC
AATACACTGAAAGCAAGCACAAAATCGACAAATTCCGCTTTGTAGACTTTGCGCGTAGAAAACACTCTATATAG

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(90-226)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

51.709

98.734

0.511