Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NQZ91_RS08250 Genome accession   NZ_CP102145
Coordinates   1633077..1634444 (+) Length   455 a.a.
NCBI ID   WP_257105014.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1633197..1642849 1633077..1634444 flank -1247


Gene organization within MGE regions


Location: 1633077..1642849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ91_RS08250 (NQZ91_08250) radA 1633077..1634444 (+) 1368 WP_257105014.1 DNA repair protein RadA Machinery gene
  NQZ91_RS08255 (NQZ91_08255) - 1634673..1635020 (+) 348 WP_105110614.1 hypothetical protein -
  NQZ91_RS08260 (NQZ91_08260) - 1635062..1636819 (+) 1758 WP_257104935.1 glycerophosphodiester phosphodiesterase -
  NQZ91_RS08265 (NQZ91_08265) - 1636909..1637445 (-) 537 WP_238140691.1 GNAT family N-acetyltransferase -
  NQZ91_RS08270 (NQZ91_08270) - 1637460..1637759 (-) 300 WP_105122352.1 YbaB/EbfC family nucleoid-associated protein -
  NQZ91_RS08275 (NQZ91_08275) - 1637867..1638193 (-) 327 WP_257104934.1 helix-turn-helix domain-containing protein -
  NQZ91_RS08280 (NQZ91_08280) - 1638450..1639061 (+) 612 WP_257104933.1 zinc ribbon domain-containing protein -
  NQZ91_RS08285 (NQZ91_08285) - 1639071..1640243 (+) 1173 WP_257104932.1 superinfection immunity protein -
  NQZ91_RS08290 (NQZ91_08290) - 1640265..1640423 (+) 159 WP_172007036.1 hypothetical protein -
  NQZ91_RS08295 (NQZ91_08295) - 1640420..1641526 (+) 1107 WP_257104931.1 DUF4767 domain-containing protein -
  NQZ91_RS08300 (NQZ91_08300) - 1641527..1642849 (+) 1323 WP_257104930.1 DUF6287 domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49855.38 Da        Isoelectric Point: 6.1911

>NTDB_id=714961 NQZ91_RS08250 WP_257105014.1 1633077..1634444(+) (radA) [Streptococcus suis strain DNS20]
MIIAKKKTTFVCQNCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=714961 NQZ91_RS08250 WP_257105014.1 1633077..1634444(+) (radA) [Streptococcus suis strain DNS20]
ATCATCATCGCTAAGAAAAAAACAACCTTTGTCTGCCAAAATTGTGAATATCATTCACCCAAGTACCTGGGGCGCTGTCC
TAACTGTGGTTCTTGGTCTAGCTTTGTTGAAGAAGTTGAAGTGGCGGAGGTCAAAAATGCCCGCGTCAGCCTGACTGGTG
AGAAGACCCGTCCGATGAAGCTTAATGAAGTGTCGTCCATTCAAGTGGCTCGCACCAAGACCAATATGGAGGAGTTTAAC
CGCGTCTTAGGTGGTGGAGTGGTGCCGGGCAGTCTGGTCCTGATTGGTGGTGATCCAGGGATTGGCAAGTCCACCTTGCT
CCTGCAAGTATCGACCCAACTTTCGACTATTGGCACCGTCCTCTACGTGTCGGGGGAAGAGTCTGCCCAGCAGATTAAGC
TCCGTGCCGAGCGTTTGGGCGACATTGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAAATCAAGCCAGATTTCCTAATTATCGACTCTATCCAGACCATTATGAGTCCTGACATCTCCAGCGTGCAAGG
CTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAGCTCATGCAGATTGCCAAGACCAACAATATCGCAACCTTTATCGTCG
GCCACATGACCAAGGAGGGAACCCTGGCTGGACCGCGGACCTTGGAGCACATGGTAGACACCGTTCTTTATTTTGAGGGC
GAGCGGCAGCACACCTTCCGTATCTTGCGGGCGGTCAAGAACCGCTTTGGCTCTACCAACGAGATCGGCATTTTTGAAAT
GCAGTCACAGGGCTTGGTCGAAGTCCTCAATCCTAGTGAGGTCTTTCTGGAAGAGCGTCTGGATGGGGCGACTGGCTCGG
CTATTGTCGTGACCATGGAGGGAACCCGCCCAATCCTTGCGGAAGTGCAGGCTCTGGTGACCCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGACTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTATCTCAAGTCAGCAGGTGGAGTCAAACTGGATGAGCCAGCCATCGACCTAGCAGTCGCAG
TTGCCCTTGCCTCCAGCTACAAGGACAAGCCTACCAACCCACAAGAGTGCTTTATAGGCGAAATCGGTCTGACAGGGGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCTAAATTGGGCTTTACCAAGGTCTATGCCCCTAAAAA
TTCCCTGACAGGAATCAAGGTACCAAAGGAAATCACGGTTATCGGAGTGACCACCATTGGCGAAGTCTTGCAGAAGGTAT
TTGAGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.814

99.341

0.912
  radA Streptococcus pneumoniae Rx1

91.593

99.341

0.91
  radA Streptococcus pneumoniae D39

91.593

99.341

0.91
  radA Streptococcus pneumoniae R6

91.593

99.341

0.91
  radA Streptococcus pneumoniae TIGR4

91.593

99.341

0.91
  radA Streptococcus mitis SK321

91.372

99.341

0.908
  radA Bacillus subtilis subsp. subtilis str. 168

62.472

99.56

0.622