Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NQZ91_RS04005 Genome accession   NZ_CP102145
Coordinates   835263..837065 (-) Length   600 a.a.
NCBI ID   WP_257117906.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS20     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 830263..842065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ91_RS03970 (NQZ91_03970) - 830395..830580 (+) 186 WP_105110949.1 hypothetical protein -
  NQZ91_RS03975 (NQZ91_03975) - 830613..831254 (-) 642 WP_257117903.1 HAD family hydrolase -
  NQZ91_RS03980 (NQZ91_03980) - 831306..831746 (-) 441 WP_257117904.1 arsenate reductase ArsC -
  NQZ91_RS03985 (NQZ91_03985) eno 832312..833619 (-) 1308 WP_099871461.1 surface-displayed alpha-enolase -
  NQZ91_RS03990 (NQZ91_03990) - 833769..834218 (+) 450 WP_257117905.1 YueI family protein -
  NQZ91_RS03995 (NQZ91_03995) - 834269..834802 (-) 534 WP_172021628.1 DUF6630 family protein -
  NQZ91_RS04000 (NQZ91_04000) - 834815..835261 (-) 447 WP_125265790.1 hypothetical protein -
  NQZ91_RS04005 (NQZ91_04005) pepF 835263..837065 (-) 1803 WP_257117906.1 oligoendopeptidase F Regulator
  NQZ91_RS04010 (NQZ91_04010) - 837138..837779 (-) 642 WP_257117907.1 hypothetical protein -
  NQZ91_RS04015 (NQZ91_04015) coiA 837822..838763 (-) 942 WP_257117908.1 competence protein CoiA Machinery gene
  NQZ91_RS04020 (NQZ91_04020) - 838824..839390 (+) 567 WP_105122879.1 GNAT family N-acetyltransferase -
  NQZ91_RS04025 (NQZ91_04025) metG 839421..841427 (-) 2007 WP_257118043.1 methionine--tRNA ligase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68970.16 Da        Isoelectric Point: 4.5611

>NTDB_id=714935 NQZ91_RS04005 WP_257117906.1 835263..837065(-) (pepF) [Streptococcus suis strain DNS20]
MSKQRHEIEEKYQWDLATIFPTDEAWEAELADLQAETEKAKAFAGHLLDSAKSLLEISETQLGLIRRLEKLYVYANMKND
QDTREGKYQEFQAKGMTLYSAFSQAFAFYEPEFMAITEEQLEAFKAEEPALTQYNHQFEKLLAAKDHILSQEVEEVLAAT
SEIFEAPSETFSVLDNASLRFPEIADEDGKLVPLSHGNYISFMESKNREVRQEAYEALYETYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHAALSANFIPESVYDTLVSAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSSTDTKVTYEEALA
TCVETLDIFGDEYAAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRQN
QPYVYGHYSIFLAEIASTTNENLLTEKLLAEVEDDKTRFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNQLYGKLNEKYYGLSAEENPLIQYEWARIPHFYYNFYVYQYSTGFAAASALADKIVNGNPEDKENYLNYLKAGSSDYPL
NVIAKAGVDMTKEDYLNDAFKVFEARLTELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=714935 NQZ91_RS04005 WP_257117906.1 835263..837065(-) (pepF) [Streptococcus suis strain DNS20]
ATGTCAAAACAACGTCATGAAATCGAAGAAAAATACCAGTGGGATTTAGCGACTATTTTCCCAACAGATGAGGCTTGGGA
AGCCGAGTTGGCTGATCTCCAAGCAGAAACAGAAAAAGCTAAGGCCTTTGCAGGTCACTTGTTGGACTCAGCTAAGAGCC
TTTTGGAGATTAGCGAAACCCAGCTTGGTCTGATTCGTAGGCTTGAAAAGCTCTATGTCTATGCGAATATGAAAAATGAC
CAAGATACTCGTGAAGGGAAATATCAGGAATTCCAAGCTAAAGGTATGACCCTCTATTCTGCCTTTTCACAGGCTTTTGC
CTTCTATGAGCCAGAATTTATGGCCATTACTGAGGAGCAACTAGAGGCTTTCAAGGCAGAAGAGCCAGCTCTTACTCAGT
ACAACCACCAGTTTGAAAAACTCTTGGCAGCCAAGGATCACATCTTGTCACAAGAAGTAGAAGAAGTTCTTGCGGCGACC
AGTGAGATTTTTGAAGCACCATCTGAAACATTCTCTGTCTTGGATAATGCTAGCCTGCGTTTCCCAGAAATCGCAGATGA
GGACGGCAAGTTGGTGCCCCTTTCTCACGGCAACTACATCTCCTTTATGGAGTCCAAAAACCGCGAAGTGCGTCAAGAGG
CCTATGAGGCACTCTACGAAACCTACGAGCAGTTCCAGCATACCTACGCCAAGACCCTTCAGTCTAACGTTAAGGTCAAT
AACCTGAAAGCTCGTTTGCGGAAGTACGACTCTGCTCGCCACGCAGCCCTTTCTGCCAACTTTATCCCAGAGTCCGTTTA
CGATACATTAGTGTCAGCAGTCAACAAGCACCTCCCGCTCTTGCACCGCTACATCAATTTGCGTAAGAAACTCTTGGGTA
TTGATGACCTTAAGATGTACGATATGTACACACCGCTTTCGAGCACAGATACAAAAGTCACCTATGAGGAGGCCTTGGCT
ACTTGTGTCGAAACCTTGGATATCTTTGGTGATGAGTACGCGGCCATTGTCAAAGAAGCCTTTGAAAACCGCTGGATTGA
TGTCCATGTCAACGAAGGCAAGCGTTCAGGAGCCTATTCAGGTGGTGCTTACGACACCAACGCCTTCATGCTCCTCAACT
GGCAGGACAATTTGGACAATATGTACACCCTGATTCACGAAACAGGGCATTCACTTCATTCGATGTTGACTCGTCAGAAT
CAGCCCTATGTCTATGGTCACTATTCGATTTTCTTGGCTGAGATTGCGTCAACAACCAACGAAAATCTCTTGACTGAGAA
GCTCTTGGCAGAAGTGGAAGACGACAAGACCCGCTTTGCTATTCTCAATCACTACCTCGACGGTTTCCGTGGAACGGTCT
TCCGTCAAACCCAATTTGCTGAGTTTGAGCAGGCTATTTACAAGGCTGACCAGGAAGGCCAAGTCTTGACCGCTGATTTC
CTCAACCAGCTTTACGGTAAACTCAATGAGAAGTATTATGGCTTGTCTGCGGAAGAAAATCCATTGATTCAGTATGAGTG
GGCTCGTATTCCACATTTCTATTACAATTTCTATGTTTACCAATATTCAACTGGCTTTGCGGCAGCGTCTGCTTTAGCAG
ACAAGATTGTCAATGGTAACCCAGAGGACAAGGAAAACTACCTCAACTACCTCAAGGCTGGTAGCTCTGATTATCCACTC
AATGTCATCGCAAAAGCTGGCGTGGATATGACCAAGGAAGACTATCTCAACGATGCCTTCAAGGTCTTTGAAGCCCGCTT
GACAGAGTTGGAAGCTCTCGTTGAGAAAGGTGTGCACCTATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.167

100

0.692