Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   OSR41_RS06335 Genome accession   NZ_CP116941
Coordinates   1246506..1249898 (+) Length   1130 a.a.
NCBI ID   WP_003180433.1    Uniprot ID   -
Organism   Bacillus licheniformis strain GN02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1241506..1254898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSR41_RS06325 (OSR41_06325) addA 1241570..1245262 (+) 3693 WP_075178119.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  OSR41_RS06330 (OSR41_06330) sbcD 1245328..1246509 (+) 1182 WP_075178120.1 exonuclease subunit SbcD -
  OSR41_RS06335 (OSR41_06335) sbcC 1246506..1249898 (+) 3393 WP_003180433.1 exonuclease subunit SbcC Machinery gene
  OSR41_RS06340 (OSR41_06340) - 1249943..1250161 (-) 219 WP_016885923.1 spore germination protein -
  OSR41_RS06345 (OSR41_06345) - 1250217..1250600 (-) 384 WP_003180437.1 spore germination protein GerPE -
  OSR41_RS06350 (OSR41_06350) - 1250597..1250779 (-) 183 WP_003180439.1 hypothetical protein -
  OSR41_RS06355 (OSR41_06355) - 1250776..1251381 (-) 606 WP_009328892.1 spore germination protein GerPC -
  OSR41_RS06360 (OSR41_06360) - 1251402..1251644 (-) 243 WP_003180443.1 spore germination protein GerPB -
  OSR41_RS06365 (OSR41_06365) - 1251656..1251877 (-) 222 WP_003180445.1 spore germination protein -
  OSR41_RS06370 (OSR41_06370) - 1252059..1252352 (+) 294 WP_044790167.1 DUF3784 domain-containing protein -
  OSR41_RS06375 (OSR41_06375) - 1252434..1252613 (-) 180 WP_011197747.1 aspartyl-phosphate phosphatase Spo0E family protein -
  OSR41_RS06380 (OSR41_06380) - 1252780..1253853 (-) 1074 WP_034291635.1 CotH kinase family protein -
  OSR41_RS06385 (OSR41_06385) cotG 1254019..1254489 (+) 471 WP_003180451.1 spore coat protein CotG -

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 128977.64 Da        Isoelectric Point: 5.4261

>NTDB_id=714914 OSR41_RS06335 WP_003180433.1 1246506..1249898(+) (sbcC) [Bacillus licheniformis strain GN02]
MKPISLSIKGLHSFRQEQVIDFERLCDAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNHAEDELAVSFTF
KLQTGHETAYKVERVFKRTDAVKVKTSICRFIEMKEEQIVLADKANEVNRKIEELLGLTIDDFTRAVVLPQGKFAEFLSL
KGAERRQMLQRLFNLEQYGDRLVKKLKKQAQTAQARKNEMLAEQAGLGDAGEEALKQAEQHLEEAESLLQSKKRERDAEA
QRFAEYQEIWNLQQEKESYLKKEAELLKKQEQIREKESRLHLAETANTLKPYADALLAAREDAERAHREEKQAREQLEQY
EELHKKTEREYEDFRRLKNEKEPELLKQEEQLTALKEIENKRLAAQAEAEKKQREQRLKEEEIKHAADELAKVKSLLERG
TAKQNQLKAELKSVQVSSEERKNCRNANQLAFHIQQLNNDAALEKERLGQQETLIKELQQEQQAVDQKVKAETERIEALF
AAVERAYALVCETDRSLSETIRVASQKKEEIAAKREQANRDQLAIELAKQLKDGEPCPVCGSVHHEMPARVGIESLSFKE
ADSELEKTEAIIAEAGALAQEFLSAKVALEQQSDHLVSECPFLVKSKHELPETAASIEEGTIPERYNRISFEWKGIRQDL
AETKSRMSKLLHTYKELCKKRDQISERLSHEEKERNRLQNRVGELNDQLNERRKSFGEQFDGLSYEQAEKWQKTIEEKDL
AAEEFEKRIETSVGFLTKHEQQKEKLTERLFALDKEKLDLRYAVESLNKEINDYQKELMGYPDTAAIDKKLQDVKTQLAK
LHEQEQTLYGRLKETESEVSRLRGQTKGCELALREAEARLAKAADIWQEKSGGTPFEKASEVKASILDRDDLARLKEDIQ
MHWDQTKQCESNIKRITEKLDGRSVSEESWEKAAVTKDKAEEAFSKALEERGAAGKALAVIRENHKRFKELEASLAEWQT
YIDRLDKLQAVFKGNSFVEYLAEEQLESVTRDASARLGELTRQRYAIEVDSEGGFVMRDDANGGVKRPVTSLSGGETFLT
SLALALALSAQIQLRGEYPLQFFFLDEGFGTLDQDLLDTVVTALEKLQSDNLSVGVISHVQELRARLPKKLIVHPAEPSG
KGTAVSLEMI

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=714914 OSR41_RS06335 WP_003180433.1 1246506..1249898(+) (sbcC) [Bacillus licheniformis strain GN02]
ATGAAGCCGATTTCTCTGTCTATTAAGGGCCTGCACAGTTTCAGGCAGGAGCAGGTGATCGATTTTGAGCGCCTGTGCGA
TGCCGGTGTATTCGGCATCTTCGGGCCGACCGGAAGCGGCAAGTCGTCGATTCTTGATGCGATGACTCTTGCTTTGTACG
GGAAAGTGGAGCGGGCCGCCAATAATACGCACGGCATTTTGAACCATGCCGAAGATGAGCTTGCCGTATCGTTTACGTTT
AAGCTGCAGACAGGCCATGAGACGGCTTATAAAGTGGAACGGGTCTTTAAGCGGACAGACGCCGTCAAGGTCAAAACGTC
GATATGCCGCTTTATTGAAATGAAAGAGGAACAAATCGTCCTGGCCGATAAAGCGAATGAAGTAAACCGAAAAATCGAAG
AGCTGCTGGGCTTGACGATCGACGATTTTACAAGGGCAGTCGTCCTGCCGCAAGGTAAATTCGCCGAATTTCTTTCCTTA
AAAGGAGCGGAGCGGCGGCAGATGCTTCAGCGCCTGTTCAACCTCGAACAATACGGGGACAGGCTCGTCAAAAAACTGAA
GAAACAGGCGCAAACAGCGCAGGCCAGAAAAAATGAGATGCTTGCCGAGCAGGCTGGATTGGGCGATGCGGGGGAAGAGG
CGCTGAAACAGGCGGAACAGCATCTCGAAGAAGCTGAAAGCCTTTTGCAAAGCAAGAAGCGCGAACGAGACGCAGAAGCG
CAGCGCTTTGCGGAGTATCAGGAGATTTGGAACCTGCAGCAGGAAAAAGAAAGCTATCTGAAAAAAGAGGCGGAGCTTTT
AAAGAAACAGGAACAGATTCGGGAAAAAGAAAGCCGCCTGCACCTCGCCGAAACGGCAAATACGCTCAAGCCTTATGCAG
ACGCCTTGCTGGCAGCGCGGGAAGATGCCGAGCGCGCACACCGGGAAGAAAAACAAGCGCGGGAACAATTAGAACAATAT
GAAGAGCTTCATAAAAAAACAGAACGCGAGTACGAGGATTTCAGGCGTCTTAAAAATGAAAAGGAACCGGAGCTTCTCAA
GCAAGAAGAACAGCTCACCGCTTTGAAGGAAATTGAAAACAAGCGGCTAGCCGCACAGGCCGAGGCCGAGAAGAAGCAGC
GCGAACAGCGTTTGAAAGAAGAGGAAATCAAGCATGCGGCAGACGAGCTGGCCAAGGTGAAAAGTCTGCTTGAACGCGGG
ACAGCCAAGCAGAATCAGCTGAAAGCGGAGCTGAAATCTGTCCAGGTATCTAGCGAAGAGCGTAAAAACTGCCGAAATGC
CAATCAGCTTGCTTTTCACATTCAACAGCTTAACAACGATGCCGCTTTAGAAAAGGAACGGCTTGGTCAGCAGGAGACGC
TGATTAAAGAGCTCCAGCAAGAACAGCAAGCGGTGGATCAAAAGGTAAAAGCTGAAACCGAACGCATCGAGGCATTGTTT
GCCGCTGTCGAACGAGCGTACGCGCTCGTTTGCGAAACAGACAGATCGCTCTCTGAGACCATCCGTGTGGCATCTCAAAA
AAAAGAAGAGATTGCGGCAAAACGGGAACAGGCAAACCGTGATCAGCTGGCAATCGAACTGGCAAAGCAGCTCAAAGACG
GAGAGCCTTGTCCGGTCTGCGGATCTGTACATCATGAAATGCCCGCCCGCGTCGGCATAGAAAGCCTGTCCTTTAAAGAG
GCGGATTCCGAACTGGAGAAAACGGAAGCCATCATCGCTGAAGCCGGTGCGCTGGCTCAGGAGTTTCTCTCGGCCAAAGT
GGCACTCGAACAGCAATCCGACCACCTGGTGAGCGAATGCCCGTTTTTAGTCAAGAGCAAACATGAACTGCCTGAAACCG
CTGCATCGATAGAAGAAGGCACCATTCCCGAACGGTACAACCGCATCAGCTTTGAATGGAAAGGAATCAGACAGGATCTC
GCAGAGACAAAAAGCAGGATGTCCAAGCTCCTTCACACATATAAAGAGCTCTGCAAGAAACGCGACCAAATCAGCGAGCG
ACTCAGCCATGAAGAAAAGGAGCGTAACAGGCTTCAAAACCGCGTCGGCGAATTAAATGACCAGTTAAATGAACGCCGAA
AAAGCTTCGGCGAACAATTCGACGGCCTCTCTTATGAACAGGCTGAAAAATGGCAAAAAACGATTGAAGAAAAAGATCTG
GCCGCAGAGGAATTCGAAAAGCGTATCGAAACGAGCGTCGGCTTTCTCACAAAACATGAACAGCAAAAAGAGAAGCTCAC
CGAGCGCTTGTTTGCGCTTGATAAAGAAAAGCTCGACCTCCGCTATGCTGTCGAAAGCCTTAATAAAGAAATAAACGATT
ATCAAAAAGAGCTGATGGGCTATCCCGATACAGCTGCAATCGACAAAAAGCTTCAAGACGTGAAAACGCAATTGGCCAAG
CTGCATGAGCAGGAACAGACGCTTTACGGACGGCTCAAAGAGACCGAATCCGAAGTCAGCCGTTTAAGAGGACAGACAAA
AGGGTGTGAGCTCGCTTTGCGTGAAGCGGAAGCAAGGCTTGCGAAAGCGGCGGACATCTGGCAGGAAAAATCCGGAGGTA
CACCGTTTGAAAAGGCCTCTGAAGTGAAAGCGAGCATTTTAGACCGCGATGATCTTGCCCGGCTGAAAGAAGACATTCAA
ATGCATTGGGATCAGACAAAACAGTGCGAGTCCAATATCAAGCGGATTACGGAAAAGCTTGATGGGAGATCGGTTTCTGA
GGAGAGTTGGGAAAAAGCCGCCGTCACGAAGGACAAAGCTGAGGAGGCATTCAGCAAAGCCTTGGAAGAAAGGGGCGCGG
CCGGCAAAGCTCTCGCCGTCATCCGCGAGAACCATAAAAGGTTTAAGGAACTTGAAGCATCATTGGCTGAATGGCAGACA
TACATCGACCGTCTTGATAAACTCCAAGCCGTCTTTAAAGGAAACAGCTTTGTTGAATACTTGGCAGAAGAGCAGCTTGA
AAGCGTCACAAGAGACGCATCTGCAAGACTCGGCGAACTGACAAGACAGAGGTATGCGATTGAAGTCGACTCAGAAGGCG
GTTTTGTGATGAGGGACGATGCCAACGGCGGAGTCAAGCGCCCTGTTACGAGTCTGTCAGGTGGGGAGACGTTTCTGACT
TCACTGGCGCTTGCGCTTGCACTTTCGGCACAGATCCAGCTTCGCGGAGAGTATCCGCTCCAATTCTTCTTTTTGGACGA
AGGGTTTGGCACGCTTGATCAGGATTTGCTGGATACGGTCGTGACCGCATTGGAGAAGCTTCAGTCTGACAATCTGTCGG
TCGGTGTGATCAGCCACGTTCAGGAACTTCGGGCCAGGCTGCCGAAGAAGCTGATTGTCCATCCGGCTGAACCGAGCGGC
AAAGGCACAGCTGTATCGCTTGAAATGATTTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_23)

(5-276)

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(1002-1085)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

56.614

100

0.568