Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   OSR41_RS03995 Genome accession   NZ_CP116941
Coordinates   808231..808947 (+) Length   238 a.a.
NCBI ID   WP_003179748.1    Uniprot ID   -
Organism   Bacillus licheniformis strain GN02     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 803231..813947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSR41_RS03980 (OSR41_03980) - 803434..804846 (+) 1413 WP_009329067.1 alanine/glycine:cation symporter family protein -
  OSR41_RS03985 (OSR41_03985) treP 805035..806447 (+) 1413 WP_011197645.1 PTS system trehalose-specific EIIBC component -
  OSR41_RS03990 (OSR41_03990) treC 806521..808209 (+) 1689 WP_003179746.1 alpha,alpha-phosphotrehalase -
  OSR41_RS03995 (OSR41_03995) treR 808231..808947 (+) 717 WP_003179748.1 trehalose operon repressor Regulator
  OSR41_RS04000 (OSR41_04000) - 809054..809746 (+) 693 WP_003179750.1 N-acetyltransferase -
  OSR41_RS04005 (OSR41_04005) - 809873..811189 (+) 1317 WP_061577026.1 NTTRR-F1 domain -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27733.55 Da        Isoelectric Point: 5.8721

>NTDB_id=714897 OSR41_RS03995 WP_003179748.1 808231..808947(+) (treR) [Bacillus licheniformis strain GN02]
MKINKYMMIYKQIAEQIDQSILNAGDILPSENDLAEQHDTSRETVRKALNVLAQNGYIQKIKGKGSVVLHREKMQFPVSG
LVSFKELSETLGKETSTTVHEFGLTHPDAYIQKQLRTSGDEEVWRVVRSRNINGERIILDKDYLIRKHVPLLTKEICEDS
IYQYLEDECGLVISYAHKEIVVEPCTAEDQEYLDLNGYEHIVVVKNFVFLDDTTLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=714897 OSR41_RS03995 WP_003179748.1 808231..808947(+) (treR) [Bacillus licheniformis strain GN02]
ATGAAGATCAACAAGTATATGATGATTTACAAACAAATCGCGGAACAAATCGATCAAAGCATACTGAATGCCGGAGATAT
CCTGCCGTCTGAAAACGACCTTGCCGAACAGCACGACACCTCGAGGGAAACCGTTCGGAAAGCGCTGAACGTGCTTGCTC
AGAACGGATATATTCAGAAGATTAAAGGGAAGGGGTCAGTCGTGCTGCACAGGGAGAAAATGCAGTTCCCGGTTTCCGGT
TTGGTCAGCTTTAAGGAGCTTTCAGAAACGCTCGGAAAAGAGACAAGCACGACGGTCCATGAGTTCGGCTTGACGCATCC
GGACGCATATATTCAAAAGCAGCTCCGCACTTCCGGAGATGAAGAGGTATGGCGGGTTGTCAGGTCGCGGAACATCAACG
GAGAGCGTATCATCCTGGATAAAGACTATCTTATCCGCAAACACGTGCCGCTTTTAACGAAAGAAATATGCGAGGACTCG
ATCTATCAATACCTTGAAGATGAATGCGGGCTCGTCATCAGCTATGCTCATAAGGAAATTGTAGTCGAGCCATGTACGGC
AGAGGATCAAGAGTATTTGGATCTGAACGGATACGAGCACATTGTGGTCGTGAAAAATTTCGTTTTTCTTGATGATACGA
CCTTGTTTCAATATACGGAAAGCAGACACCGCCTTGATAAATTCCGGTTTGTCGATTTTGCAAGAAGAGAAAAGTAG

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(6-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

41.949

99.16

0.416