Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   NQZ92_RS03195 Genome accession   NZ_CP102143
Coordinates   609394..610059 (+) Length   221 a.a.
NCBI ID   WP_004194119.1    Uniprot ID   A0A140EWV9
Organism   Streptococcus suis strain DNR43     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 604394..615059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ92_RS03175 (NQZ92_03175) - 605407..605598 (+) 192 Protein_586 aquaporin -
  NQZ92_RS03180 (NQZ92_03180) - 605943..607145 (+) 1203 WP_306455548.1 IS110-like element ISSsu7 family transposase -
  NQZ92_RS03185 (NQZ92_03185) - 607420..608052 (-) 633 WP_004194123.1 YigZ family protein -
  NQZ92_RS03190 (NQZ92_03190) comFA/cflA 608109..609401 (+) 1293 WP_004194121.1 DEAD/DEAH box helicase Machinery gene
  NQZ92_RS03195 (NQZ92_03195) comFC/cflB 609394..610059 (+) 666 WP_004194119.1 ComF family protein Machinery gene
  NQZ92_RS03200 (NQZ92_03200) hpf 610136..610678 (+) 543 WP_004194117.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  NQZ92_RS03205 (NQZ92_03205) - 610736..611680 (-) 945 WP_226960621.1 IS30 family transposase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25748.55 Da        Isoelectric Point: 8.2726

>NTDB_id=714893 NQZ92_RS03195 WP_004194119.1 609394..610059(+) (comFC/cflB) [Streptococcus suis strain DNR43]
MSNCLLCGQAMKNKTRFSDLIFFSKEKSGICEECFSTFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKPVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLDATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=714893 NQZ92_RS03195 WP_004194119.1 609394..610059(+) (comFC/cflB) [Streptococcus suis strain DNR43]
ATGTCTAATTGTCTATTGTGCGGTCAAGCTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGCATCTGTGAAGAATGTTTTTCGACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGAG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTGGATGCTACAAATATTCCTTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCTAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCCACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A140EWV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae TIGR4

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae Rx1

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae D39

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae R6

49.083

98.643

0.484
  comFC/cflB Streptococcus mitis NCTC 12261

49.083

98.643

0.484