Detailed information NTG0714865

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: NQZ93_RS10670
• Genome accession: NZ_CP102141
• Coordinates: 2131498..2132865 (-)
• Length: 455 a.a.
• NCBI ID: WP_024390656.1
• Uniprot ID: A0A075SKT6
• Organism: Streptococcus suis strain DNR48
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	2124777..2133855	2131498..2132865	within	0

Gene organization within MGE regions

Location: 2124777..2133855

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NQZ93_RS10625 (NQZ93_10625)	-	2124777..2125064 (-)	288	WP_024390657.1	hypothetical protein	-
NQZ93_RS10630 (NQZ93_10630)	-	2125125..2125487 (+)	363	WP_024381187.1	MerR family transcriptional regulator	-
NQZ93_RS10635 (NQZ93_10635)	gltX	2125525..2126979 (-)	1455	WP_024381188.1	glutamate--tRNA ligase	-
NQZ93_RS11615	-	2127259..2128539 (-)	1281	Protein_2047	MFS transporter	-
NQZ93_RS10650 (NQZ93_10650)	-	2128626..2129285 (-)	660	WP_024381189.1	hypothetical protein	-
NQZ93_RS10655 (NQZ93_10655)	-	2129290..2129736 (-)	447	WP_024381190.1	LytTR family DNA-binding domain-containing protein	-
NQZ93_RS10660 (NQZ93_10660)	-	2129914..2130672 (-)	759	WP_002939965.1	TIGR00266 family protein	-
NQZ93_RS10665 (NQZ93_10665)	-	2130880..2131374 (-)	495	WP_024381191.1	carbonic anhydrase	-
NQZ93_RS10670 (NQZ93_10670)	radA	2131498..2132865 (-)	1368	WP_024390656.1	DNA repair protein RadA	Machinery gene
NQZ93_RS10675 (NQZ93_10675)	-	2132872..2133405 (-)	534	WP_024381193.1	histidine phosphatase family protein	-
NQZ93_RS10680 (NQZ93_10680)	-	2133412..2133855 (-)	444	WP_002939955.1	dUTP diphosphatase	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 49873.40 Da
• Isoelectric Point: 6.1911

>NTDB_id=714865 NQZ93_RS10670 WP_024390656.1 2131498..2132865(-) (radA) [Streptococcus suis strain DNR48]
MTIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVLGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPINPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVVGVTTIGEVLQKVFN

Nucleotide

• Length: 1368 bp

>NTDB_id=714865 NQZ93_RS10670 WP_024390656.1 2131498..2132865(-) (radA) [Streptococcus suis strain DNR48]
ATGACCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCCAAGTACCTGGGCCGTTGTCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTCAAGAACGAGCGGGTCAGCCTGACAGGTG
AGAAGACCCGACCTATGAAGCTCAATGAAGTGTCGTCCATTCAAGTGGCTCGCACTAAGACCAACATGGAAGAGTTCAAC
CGCGTCCTCGGTGGCGGCGTGGTGCTGGGCAGTTTGGTCCTGATTGGAGGCGATCCAGGGATTGGCAAGTCCACCTTGCT
CCTGCAAGTATCCACTCAGCTGTCTACCATTGGCACCGTCCTCTATGTGTCGGGGGAAGAGTCTGCCCAGCAGATTAAGT
TGCGGGCGGAACGATTGGGCGACATTGATAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAGATAAAACCAGATTTTCTGATTATCGACTCTATCCAGACCATTATGAGTCCTGACATCTCCAGCGTGCAAGG
ATCTGTCAGTCAGGTCCGTGAAGTGACCAATGAGCTCATGCAGATTGCCAAGACCAACAATATCGCAACCTTTATCGTCG
GCCACATGACTAAGGAAGGAACCCTGGCTGGACCGAGGACCTTGGAGCATATGGTGGATACCGTTCTTTATTTTGAGGGC
GAGCGGCAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGTTCCACCAACGAAATCGGCATTTTTGAAAT
GCAGTCGCAGGGCTTGGTCGAAGTCCTCAATCCTAGCGAGGTCTTTCTGGAAGAGCGTCTGGACGGAGCGACTGGCTCTG
CCATTGTCGTGACCATGGAGGGCACCCGCCCAATCCTTGCGGAAGTGCAGGCTCTGGTGACGCCGACTATGTTTGGCAAT
GCCAAGCGGACCACGACAGGACTGGATTTCAACCGTGCTAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTTAAGTCAGCAGGCGGGGTCAAACTGGATGAACCAGCCATTGACCTAGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGACAAGCCAATCAACCCACAAGAGTGCTTTATAGGCGAAATCGGTCTGACAGGGGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAATTGGGCTTTACCAAGGTCTATGCCCCAAAAAA
TTCCCTGACAGGTATCAAGGTGCCCAAGGAAATCACTGTTGTCGGCGTGACCACCATTGGCGAAGTCTTACAGAAAGTAT
TCAACTGA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (64-220)

• Subunit ChlI of Mg-chelatase (ChlI) (363-427)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (10-37)

3D structure

• AlphaFold DB: A0A075SKT6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus mitis NCTC 12261	90.708	99.341	0.901
radA	Streptococcus pneumoniae Rx1	90.487	99.341	0.899
radA	Streptococcus pneumoniae D39	90.487	99.341	0.899
radA	Streptococcus pneumoniae R6	90.487	99.341	0.899
radA	Streptococcus pneumoniae TIGR4	90.487	99.341	0.899
radA	Streptococcus mitis SK321	90.265	99.341	0.897
radA	Bacillus subtilis subsp. subtilis str. 168	62.472	99.56	0.622