Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   NQZ94_RS09085 Genome accession   NZ_CP102140
Coordinates   1804564..1806354 (-) Length   596 a.a.
NCBI ID   WP_013730559.1    Uniprot ID   -
Organism   Streptococcus suis strain DNC49     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1799564..1811354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ94_RS09065 (NQZ94_09065) - 1800371..1801273 (-) 903 WP_002938141.1 ABC transporter permease -
  NQZ94_RS09070 (NQZ94_09070) opp4B 1801287..1802243 (-) 957 WP_009910775.1 oligopeptide ABC transporter permease -
  NQZ94_RS09075 (NQZ94_09075) - 1802245..1803186 (-) 942 WP_002938145.1 ATP-binding cassette domain-containing protein -
  NQZ94_RS09080 (NQZ94_09080) - 1803189..1804187 (-) 999 WP_009910778.1 ABC transporter ATP-binding protein -
  NQZ94_RS09085 (NQZ94_09085) oppA 1804564..1806354 (-) 1791 WP_013730559.1 oligopeptide ABC transporter substrate-binding protein Regulator
  NQZ94_RS09090 (NQZ94_09090) pbp3 1806567..1807808 (+) 1242 WP_002938148.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  NQZ94_RS09095 (NQZ94_09095) sufB 1808082..1809497 (-) 1416 WP_002938151.1 Fe-S cluster assembly protein SufB -
  NQZ94_RS09100 (NQZ94_09100) sufU 1809847..1810287 (-) 441 WP_002938153.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 65812.86 Da        Isoelectric Point: 4.6364

>NTDB_id=714807 NQZ94_RS09085 WP_013730559.1 1804564..1806354(-) (oppA) [Streptococcus suis strain DNC49]
MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPAEVKQDGTAVSDAQLKYAWVSPTTSSGLLIDELTENTTDST
FGGFVDISMFGYDGERKLDDSGLAKAEFDVKGKKITISLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGIRFDDKFLN
IEGMQEFVDGKASDISGIKKVDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEYFFKGTKPKTSSLKIDIVSPDTIVSEMKAGNYDIAEMPVDQLDSYKDVSNLNIVGQLESSYEYI
SFNLGKYDEAANKNVMDEKAKMNDVKLRQAIAYAIDTKTAGKSLYNGLYHPAKSLIISFFGDIHDSELEGYSYNPEKAKK
LLDEAGYKDVDGDGIREGKDGKAFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEGKSFYNSVQANDPAID
MYAGGWSTGYDPNPSGLWGSVAAFNMSRFVSDENTKLLEAISSAESFDDKKNVENYKAWQKYAHEQAFAIPTFESESIVA
LNKRVKNYDTNYGSASGKGIALENIELTADKGVVAE

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=714807 NQZ94_RS09085 WP_013730559.1 1804564..1806354(-) (oppA) [Streptococcus suis strain DNC49]
ATGAAAAAGACAACGAAACTTTTTGCACTTGCAGGTGTGACTCTCCTTTCAGCATCTGTTCTTGCAGCATGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCCAGCTGAAGTAAAACAAGACGGAACAGCAGTGTCTGACGCTCAGT
TGAAATACGCATGGGTATCACCAACAACTTCATCAGGTCTCTTGATTGATGAGTTGACTGAAAATACGACTGACTCAACA
TTTGGTGGTTTTGTTGATATTTCAATGTTCGGTTACGACGGAGAACGTAAGTTGGACGACTCAGGTCTTGCCAAGGCTGA
ATTTGATGTGAAAGGTAAAAAAATCACAATTAGCTTGACAGGCAAGGATTACAAGTGGTCAGATGGTGAGCCATTCACAA
TCAACGACTACATCTTTACAATTAAGTCAATGGCAAGCAAAGACTATACAGGTATTCGTTTTGATGATAAATTCTTGAAC
ATTGAAGGCATGCAAGAATTTGTTGATGGAAAAGCATCAGACATCTCTGGTATTAAGAAAGTTGATGACTATACAGTAGA
ATTGACTGTAAAAGAAATGTCACCTTCAATGATGTATGCAGGTGGTGATGTCCCAGCCTATATCCAACCAGAACACATCT
ATAAAGACATCCCTGTTGCAGACTGGGAAAAGAGCGAATACTCACGTACTGCGAAGCTTGTTGGTATGGGACCGTGGAAG
ATTAAAGAAATTGTTAATGGTGAGTCTATCACTTACGTACCAAACGAATACTTTTTCAAGGGTACGAAACCAAAAACAAG
CTCATTGAAGATTGACATCGTATCTCCTGATACTATTGTTTCTGAAATGAAAGCGGGGAATTATGATATTGCTGAAATGC
CGGTTGATCAGTTAGATTCATATAAGGATGTTTCTAACTTGAATATCGTTGGTCAGTTAGAGTCGTCTTATGAGTATATC
TCGTTTAATCTTGGTAAATATGACGAAGCAGCTAATAAGAACGTTATGGATGAAAAGGCTAAGATGAATGATGTGAAACT
TCGTCAAGCAATTGCCTATGCAATTGATACCAAGACAGCTGGCAAATCATTGTACAACGGTCTTTACCACCCTGCAAAAT
CATTGATTATCTCATTCTTCGGGGATATTCATGATTCAGAGTTGGAAGGCTATTCATACAATCCTGAAAAAGCGAAAAAG
CTTTTGGATGAAGCTGGCTACAAAGATGTAGATGGCGATGGTATCCGTGAAGGTAAAGACGGTAAGGCGTTCAAAATTAC
CTTTGCTGCTCGTAAACGTACTGAAGCTAACGAAGCGCTTGTACAACAATATATTGCTTGGTGGAAAGAAGTTGGCTTGA
ATGTCGAACTTTACACAGGACGTACAGTTGAAGGTAAGTCGTTCTACAACTCAGTTCAAGCTAATGATCCTGCTATTGAT
ATGTATGCTGGTGGATGGTCAACAGGTTACGATCCAAATCCAAGTGGTCTATGGGGGTCTGTCGCAGCCTTCAATATGTC
ACGTTTCGTGTCCGATGAAAACACCAAGTTATTGGAAGCTATCAGCTCAGCAGAGTCGTTTGATGATAAGAAAAACGTTG
AGAACTATAAGGCTTGGCAAAAATATGCTCACGAGCAAGCATTTGCTATTCCAACATTTGAATCTGAGTCAATTGTAGCA
CTTAACAAACGTGTGAAAAACTATGACACTAACTACGGTTCAGCTTCAGGTAAAGGTATCGCTCTTGAGAATATCGAACT
TACTGCTGATAAAGGTGTAGTGGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(103-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

96.644

100

0.966