Detailed information NTG0714797

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PP479_RS08185
• Genome accession: NZ_CP116935
• Coordinates: 1705886..1706890 (+)
• Length: 334 a.a.
• NCBI ID: WP_050157670.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain CUVET18-860
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1700886..1711890

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PP479_RS08155 (PP479_08160)	fghA	1700978..1701829 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PP479_RS08160 (PP479_08165)	ispF	1701900..1702373 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PP479_RS08165 (PP479_08170)	truD	1702370..1703437 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
PP479_RS08170 (PP479_08175)	surE	1703425..1704174 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PP479_RS08175 (PP479_08180)	-	1704207..1704842 (+)	636	WP_015649078.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PP479_RS08180 (PP479_08185)	-	1704888..1705781 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PP479_RS08185 (PP479_08190)	rpoS	1705886..1706890 (+)	1005	WP_050157670.1	RNA polymerase sigma factor RpoS	Regulator
PP479_RS08190 (PP479_08195)	fdxA	1707317..1707640 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PP479_RS08195 (PP479_08200)	mutS	1707707..1710274 (-)	2568	WP_012613730.1	DNA mismatch repair protein MutS	-
PP479_RS08200 (PP479_08205)	-	1710400..1711407 (-)	1008	WP_012613731.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38249.41 Da
• Isoelectric Point: 5.0478

>NTDB_id=714797 PP479_RS08185 WP_050157670.1 1705886..1706890(+) (rpoS) [Pseudomonas aeruginosa strain CUVET18-860]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVIKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=714797 PP479_RS08185 WP_050157670.1 1705886..1706890(+) (rpoS) [Pseudomonas aeruginosa strain CUVET18-860]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGATCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.159	98.204	0.65