Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   FFJ14_RS24785 Genome accession   NZ_AP024126
Coordinates   5096567..5097559 (+) Length   330 a.a.
NCBI ID   WP_000224476.1    Uniprot ID   A7ZTW4
Organism   Escherichia coli strain NS-NP030     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5091567..5102559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFJ14_RS24760 (BvCmsNSNP030_4886) rbsD 5091691..5092110 (+) 420 WP_001297694.1 D-ribose pyranase -
  FFJ14_RS24765 (BvCmsNSNP030_4887) rbsA 5092118..5093623 (+) 1506 WP_000387753.1 ribose ABC transporter ATP-binding protein RbsA -
  FFJ14_RS24770 (BvCmsNSNP030_4888) rbsC 5093628..5094593 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  FFJ14_RS24775 (BvCmsNSNP030_4889) rbsB 5094618..5095508 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  FFJ14_RS24780 (BvCmsNSNP030_4890) rbsK 5095634..5096563 (+) 930 WP_001300603.1 ribokinase -
  FFJ14_RS24785 (BvCmsNSNP030_4891) cytR 5096567..5097559 (+) 993 WP_000224476.1 ribose operon transcriptional repressor RbsR Regulator
  FFJ14_RS24790 (BvCmsNSNP030_4892) mdtD 5097525..5098952 (-) 1428 WP_001280887.1 multidrug transporter subunit MdtD -
  FFJ14_RS24795 (BvCmsNSNP030_4893) yieP 5098975..5099667 (-) 693 WP_001131169.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36584.88 Da        Isoelectric Point: 5.2141

>NTDB_id=71477 FFJ14_RS24785 WP_000224476.1 5096567..5097559(+) (cytR) [Escherichia coli strain NS-NP030]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLSIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=71477 FFJ14_RS24785 WP_000224476.1 5096567..5097559(+) (cytR) [Escherichia coli strain NS-NP030]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAGCATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZTW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.349

100

0.376
  cytR Vibrio cholerae C6706

39.088

93.03

0.364

Multiple sequence alignment