Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   PP477_RS12235 Genome accession   NZ_CP116934
Coordinates   2576776..2577132 (+) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain CUVET20-956     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2571776..2582132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PP477_RS12210 (PP477_12210) fabF 2571988..2573232 (+) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -
  PP477_RS12215 (PP477_12215) pabC 2573232..2574047 (+) 816 WP_003091129.1 aminodeoxychorismate lyase -
  PP477_RS12220 (PP477_12220) mltG 2574053..2575102 (+) 1050 WP_003091127.1 endolytic transglycosylase MltG -
  PP477_RS12225 (PP477_12225) tmk 2575131..2575763 (+) 633 WP_003091125.1 dTMP kinase -
  PP477_RS12230 (PP477_12230) - 2575756..2576742 (+) 987 WP_003091122.1 DNA polymerase III subunit delta' -
  PP477_RS12235 (PP477_12235) pilZ 2576776..2577132 (+) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  PP477_RS12240 (PP477_12240) - 2577147..2577923 (+) 777 WP_003091117.1 TatD family hydrolase -
  PP477_RS12245 (PP477_12245) - 2578149..2579282 (-) 1134 WP_003091115.1 aminotransferase class V-fold PLP-dependent enzyme -
  PP477_RS12250 (PP477_12250) - 2579368..2580006 (+) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  PP477_RS12255 (PP477_12255) - 2580156..2580278 (+) 123 Protein_2422 radical SAM protein -
  PP477_RS12260 (PP477_12260) gmtY 2580436..2581818 (+) 1383 WP_075117044.1 gamma-mobile-trio recombinase GmtY -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=714714 PP477_RS12235 WP_003091119.1 2576776..2577132(+) (pilZ) [Pseudomonas aeruginosa strain CUVET20-956]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=714714 PP477_RS12235 WP_003091119.1 2576776..2577132(+) (pilZ) [Pseudomonas aeruginosa strain CUVET20-956]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTTTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTTGGCGACGAGGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCTCAGGGC
AACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449