Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   PP477_RS11995 Genome accession   NZ_CP116934
Coordinates   2528311..2528925 (-) Length   204 a.a.
NCBI ID   WP_003091196.1    Uniprot ID   Q02PH1
Organism   Pseudomonas aeruginosa strain CUVET20-956     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2523311..2533925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PP477_RS11970 (PP477_11970) - 2523768..2524031 (+) 264 WP_003109484.1 DUF1653 domain-containing protein -
  PP477_RS11975 (PP477_11975) topA 2524122..2526728 (+) 2607 WP_003091201.1 type I DNA topoisomerase -
  PP477_RS11980 (PP477_11980) - 2526835..2527353 (+) 519 WP_003091199.1 DUF6586 family protein -
  PP477_RS11985 (PP477_11985) - 2527559..2527792 (+) 234 WP_003109483.1 hypothetical protein -
  PP477_RS11990 (PP477_11990) sulA 2527814..2528299 (-) 486 WP_003091197.1 SOS-induced cell division inhibitor SulA -
  PP477_RS11995 (PP477_11995) dinR/lexA 2528311..2528925 (-) 615 WP_003091196.1 transcriptional repressor LexA Regulator
  PP477_RS12000 (PP477_12000) psrA 2529157..2529858 (+) 702 WP_003091195.1 transcriptional regulator PsrA -
  PP477_RS12005 (PP477_12005) nagZ 2530060..2531058 (+) 999 WP_003091194.1 beta-N-acetylhexosaminidase -
  PP477_RS12010 (PP477_12010) - 2531070..2531807 (+) 738 WP_003091193.1 S-methyl-5'-thioinosine phosphorylase -
  PP477_RS12015 (PP477_12015) - 2531854..2532483 (-) 630 WP_003091190.1 CsiV family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22505.95 Da        Isoelectric Point: 6.4989

>NTDB_id=714711 PP477_RS11995 WP_003091196.1 2528311..2528925(-) (dinR/lexA) [Pseudomonas aeruginosa strain CUVET20-956]
MQKLTPRQAEILSFIKRCLEDHGFPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEPHAANDDE
GLPVIGRVAAGAPILAEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARIGEEVT
VKRFKREGSKVWLLAENPEFAPIEVDLKEQELIIEGLSVGVIRR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=714711 PP477_RS11995 WP_003091196.1 2528311..2528925(-) (dinR/lexA) [Pseudomonas aeruginosa strain CUVET20-956]
ATGCAGAAGCTGACGCCCCGCCAAGCCGAGATCCTCTCCTTCATCAAGCGCTGCCTGGAAGACCACGGCTTTCCGCCGAC
CCGGGCGGAAATCGCCCAGGAACTCGGCTTCAAGTCGCCCAACGCCGCCGAGGAGCACCTCAAGGCGCTGGCACGCAAGG
GCGCCATCGAAATGACTCCGGGCGCCTCTCGCGGCATCCGCATTCCCGGCTTCGAACCGCATGCCGCCAACGACGATGAG
GGCCTGCCGGTGATCGGACGGGTCGCAGCCGGCGCACCGATCCTCGCCGAACAGAACATCGAGGAATCCTGCCGGATCAA
TCCCGCCTTCTTCAATCCTCGCGCCGACTACCTGTTGCGCGTGCGCGGCATGAGCATGAAGGACATCGGCATCCTCGACG
GCGACCTGCTGGCCGTCCACGTCACCCGCGAAGCGCGCAACGGCCAGGTGGTGGTCGCGCGGATCGGCGAGGAGGTCACG
GTGAAACGCTTCAAGCGCGAAGGCAGCAAGGTCTGGCTGCTGGCGGAAAACCCTGAGTTCGCTCCGATCGAAGTCGATCT
GAAGGAGCAGGAACTGATCATCGAAGGCTTGAGCGTCGGCGTGATCCGGCGCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(83-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02PH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.35

100

0.387