Detailed information NTG0714699

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PP477_RS06805
• Genome accession: NZ_CP116934
• Coordinates: 1459749..1460753 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain CUVET20-956
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1454749..1465753

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PP477_RS06775 (PP477_06775)	fghA	1454841..1455692 (+)	852	WP_003092349.1	S-formylglutathione hydrolase	-
PP477_RS06780 (PP477_06780)	ispF	1455763..1456236 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PP477_RS06785 (PP477_06785)	truD	1456233..1457300 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
PP477_RS06790 (PP477_06790)	surE	1457288..1458037 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PP477_RS06795 (PP477_06795)	-	1458070..1458705 (+)	636	WP_073660134.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PP477_RS06800 (PP477_06800)	-	1458751..1459644 (+)	894	WP_003092335.1	peptidoglycan DD-metalloendopeptidase family protein	-
PP477_RS06805 (PP477_06805)	rpoS	1459749..1460753 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PP477_RS06810 (PP477_06810)	fdxA	1461180..1461503 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PP477_RS06815 (PP477_06815)	mutS	1461570..1464137 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
PP477_RS06820 (PP477_06820)	-	1464263..1465270 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=714699 PP477_RS06805 WP_003113871.1 1459749..1460753(+) (rpoS) [Pseudomonas aeruginosa strain CUVET20-956]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=714699 PP477_RS06805 WP_003113871.1 1459749..1460753(+) (rpoS) [Pseudomonas aeruginosa strain CUVET20-956]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTTAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653