Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NQZ97_RS10900 Genome accession   NZ_CP102136
Coordinates   2239114..2240481 (-) Length   455 a.a.
NCBI ID   WP_105130739.1    Uniprot ID   A0A3R8S951
Organism   Streptococcus suis strain M105052_S26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2239114..2248299 2239114..2240481 within 0


Gene organization within MGE regions


Location: 2239114..2248299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ97_RS10900 (NQZ97_10900) radA 2239114..2240481 (-) 1368 WP_105130739.1 DNA repair protein RadA Machinery gene
  NQZ97_RS10905 (NQZ97_10905) - 2240488..2241021 (-) 534 WP_257110602.1 histidine phosphatase family protein -
  NQZ97_RS10910 (NQZ97_10910) - 2241028..2241471 (-) 444 WP_002939955.1 dUTP diphosphatase -
  NQZ97_RS10915 (NQZ97_10915) - 2241568..2242710 (-) 1143 WP_257110726.1 site-specific integrase -
  NQZ97_RS10920 (NQZ97_10920) - 2243123..2244907 (-) 1785 WP_043025223.1 ABC transporter ATP-binding protein -
  NQZ97_RS10925 (NQZ97_10925) - 2244908..2246614 (-) 1707 WP_043025225.1 ABC transporter ATP-binding protein -
  NQZ97_RS10930 (NQZ97_10930) - 2246607..2247056 (-) 450 WP_043025226.1 MarR family winged helix-turn-helix transcriptional regulator -
  NQZ97_RS10935 (NQZ97_10935) - 2247283..2248299 (+) 1017 WP_043025227.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49885.41 Da        Isoelectric Point: 6.1911

>NTDB_id=714653 NQZ97_RS10900 WP_105130739.1 2239114..2240481(-) (radA) [Streptococcus suis strain M105052_S26]
MIIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKIPKEITVIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=714653 NQZ97_RS10900 WP_105130739.1 2239114..2240481(-) (radA) [Streptococcus suis strain M105052_S26]
ATTATCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCCAAGTATCTGGGTCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTTAAGAACGAGCGGGTCAGCCTGACAGGTG
AGAAAACCCGACCTATGAAACTCAATGAAGTGTCGTCCATTCAAGTGGCTCGCACCAAGACCAATATGGAGGAGTTTAAC
CGCGTCCTCGGTGGTGGAGTGGTGCCGGGCAGTCTAGTTCTCATTGGAGGCGATCCAGGGATTGGCAAGTCCACCCTGCT
CCTGCAAGTATCCACTCAGCTGTCTACCATTGGCACCGTCCTCTATGTGTCGGGGGAGGAATCTGCCCAGCAGATTAAGT
TGCGGGCGGAACGATTGGGCGACATCGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAAATCAAGCCAGATTTCCTGATTATCGATTCAATCCAGACCATTATGAGCCCTGACATTTCTAGCGTGCAAGG
CTCTGTCAGTCAGGTCCGTGAAGTGACTAATGAGCTTATGCAGATTGCCAAGACCAACAATATCGCAACCTTTATCGTCG
GCCACATGACCAAGGAAGGAACCTTGGCTGGACCGCGGACCTTGGAGCACATGGTAGACACCGTTCTTTATTTTGAGGGC
GAGCGGCAACACACCTTCCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGCTCTACCAATGAAATCGGCATTTTTGAAAT
GCAGTCGCAGGGCTTGGTCGAAGTTCTCAATCCAAGTGAGGTCTTTCTGGAAGAGCGTCTGGACGGAGCGACTGGCTCTG
CGATTGTCGTGACCATGGAGGGTACCCGCCCTATCCTTGCCGAAGTGCAGGCTCTGGTGACGCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGATTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTCAAGTCAGCAGGAGGTGTCAAACTGGATGAGCCAGCTATTGACCTAGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGACAAGCCAACCAACCCACAAGAGTGCTTTATAGGCGAGATTGGTCTGACAGGGGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAATTGGGCTTTACCAAGGTCTATGCCCCTAAAAA
TTCCCTGACAGGTATCAAGATACCCAAGGAAATCACCGTTATCGGCGTGACCACCATTGGTGAAGTCTTGCAGAAAGTAT
TCAATTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R8S951

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.372

99.341

0.908
  radA Streptococcus pneumoniae D39

91.15

99.341

0.905
  radA Streptococcus pneumoniae R6

91.15

99.341

0.905
  radA Streptococcus pneumoniae Rx1

91.15

99.341

0.905
  radA Streptococcus pneumoniae TIGR4

91.15

99.341

0.905
  radA Streptococcus mitis SK321

90.929

99.341

0.903
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.56

0.624