Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   NQZ98_RS11265 Genome accession   NZ_CP102135
Coordinates   2225127..2225891 (+) Length   254 a.a.
NCBI ID   WP_024400054.1    Uniprot ID   -
Organism   Streptococcus suis strain M106471_S40     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2220127..2230891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ98_RS11225 (NQZ98_11225) - 2220488..2220820 (+) 333 WP_171997236.1 DUF771 domain-containing protein -
  NQZ98_RS11230 (NQZ98_11230) - 2220883..2222004 (+) 1122 WP_171997235.1 site-specific integrase -
  NQZ98_RS11250 (NQZ98_11250) - 2222509..2223192 (-) 684 WP_012775416.1 YoaK family protein -
  NQZ98_RS11255 (NQZ98_11255) rlmH 2223217..2223696 (-) 480 WP_024400055.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  NQZ98_RS11260 (NQZ98_11260) htrA 2223870..2225066 (+) 1197 WP_009911075.1 S1C family serine protease Regulator
  NQZ98_RS11265 (NQZ98_11265) spo0J 2225127..2225891 (+) 765 WP_024400054.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 29042.35 Da        Isoelectric Point: 9.4317

>NTDB_id=714602 NQZ98_RS11265 WP_024400054.1 2225127..2225891(+) (spo0J) [Streptococcus suis strain M106471_S40]
MEELRTLNISEIHPNPYQPRIHFDEKELLELAQSIKENGLIQPIIVRKSSIIGYELLAGERRLRASQLAGLTTIPAVVKE
LTDDDLLYQAIIENLQRSNLNPIEEAASYQKLISRGLTHDEVAQIMGKSRPYISNLLRLLNLSYQTKQAVEEGKISQGHA
RQLVSFSEEKQAEWVQLILSKDLSVRTLEKLIAANKKKHTKLKQRDQFLKEQEDSLSKTLGTATKILKKKNGSGEIRISF
NDLDEFERIINNFK

Nucleotide


Download         Length: 765 bp        

>NTDB_id=714602 NQZ98_RS11265 WP_024400054.1 2225127..2225891(+) (spo0J) [Streptococcus suis strain M106471_S40]
ATGGAAGAATTACGTACACTAAATATTTCAGAAATCCATCCCAATCCCTATCAGCCAAGAATTCATTTTGATGAAAAGGA
GCTACTTGAGCTCGCTCAATCTATTAAGGAAAATGGCTTAATTCAACCGATTATTGTAAGAAAATCTTCTATTATCGGAT
ACGAATTATTAGCTGGAGAAAGAAGGTTGCGAGCCAGTCAATTAGCTGGACTGACTACAATACCAGCAGTGGTAAAAGAA
CTGACTGATGATGATTTACTCTATCAGGCTATCATAGAGAATCTGCAGCGTTCTAACTTAAATCCGATAGAAGAAGCAGC
CTCTTATCAAAAATTGATTAGTAGAGGGTTAACACATGATGAAGTTGCTCAAATCATGGGAAAATCAAGACCATATATCA
GTAATTTATTGCGCCTACTAAATCTATCATATCAGACTAAACAAGCTGTAGAAGAAGGAAAAATTTCACAAGGGCACGCG
CGACAATTGGTGTCATTTTCAGAAGAAAAGCAAGCCGAATGGGTTCAACTCATTTTATCAAAGGATTTAAGTGTGCGTAC
GCTTGAAAAATTAATAGCTGCAAATAAGAAAAAACACACCAAGCTTAAACAACGTGACCAATTTTTAAAAGAACAGGAAG
ATTCACTCAGTAAAACTCTTGGAACAGCTACAAAAATTCTCAAGAAGAAAAACGGGAGCGGAGAAATTCGAATTAGCTTT
AATGACCTCGATGAATTCGAAAGAATTATCAACAATTTTAAATAG

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-94)

HTH domain found in ParB protein (HTH_ParB)

(146-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

55.159

99.213

0.547