Detailed information NTG0714602

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PP478_RS06850
• Genome accession: NZ_CP116933
• Coordinates: 1467941..1468945 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain CUVET21-397
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1462941..1473945

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PP478_RS06820 (PP478_06820)	fghA	1463033..1463884 (+)	852	WP_003092349.1	S-formylglutathione hydrolase	-
PP478_RS06825 (PP478_06825)	ispF	1463955..1464428 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PP478_RS06830 (PP478_06830)	truD	1464425..1465492 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
PP478_RS06835 (PP478_06835)	surE	1465480..1466229 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PP478_RS06840 (PP478_06840)	-	1466262..1466897 (+)	636	WP_073660134.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PP478_RS06845 (PP478_06845)	-	1466943..1467836 (+)	894	WP_003092335.1	peptidoglycan DD-metalloendopeptidase family protein	-
PP478_RS06850 (PP478_06850)	rpoS	1467941..1468945 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PP478_RS06855 (PP478_06855)	fdxA	1469372..1469695 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PP478_RS06860 (PP478_06860)	mutS	1469762..1472329 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
PP478_RS06865 (PP478_06865)	-	1472455..1473462 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=714602 PP478_RS06850 WP_003113871.1 1467941..1468945(+) (rpoS) [Pseudomonas aeruginosa strain CUVET21-397]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=714602 PP478_RS06850 WP_003113871.1 1467941..1468945(+) (rpoS) [Pseudomonas aeruginosa strain CUVET21-397]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTTAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653