Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NQZ98_RS10325 Genome accession   NZ_CP102135
Coordinates   2036348..2037715 (-) Length   455 a.a.
NCBI ID   WP_024393368.1    Uniprot ID   A0A0Z8DEI8
Organism   Streptococcus suis strain M106471_S40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2031348..2042715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ98_RS10300 (NQZ98_10300) - 2032118..2033389 (-) 1272 WP_024399872.1 MFS transporter -
  NQZ98_RS10305 (NQZ98_10305) - 2033476..2034135 (-) 660 WP_024399873.1 hypothetical protein -
  NQZ98_RS10310 (NQZ98_10310) - 2034140..2034586 (-) 447 WP_024399874.1 LytTR family DNA-binding domain-containing protein -
  NQZ98_RS10315 (NQZ98_10315) - 2034764..2035522 (-) 759 WP_013730631.1 TIGR00266 family protein -
  NQZ98_RS10320 (NQZ98_10320) - 2035730..2036224 (-) 495 WP_013730632.1 carbonic anhydrase -
  NQZ98_RS10325 (NQZ98_10325) radA 2036348..2037715 (-) 1368 WP_024393368.1 DNA repair protein RadA Machinery gene
  NQZ98_RS10330 (NQZ98_10330) - 2037722..2038165 (-) 444 WP_024399875.1 dUTP diphosphatase -
  NQZ98_RS10335 (NQZ98_10335) - 2038396..2038755 (-) 360 WP_024388516.1 YbaN family protein -
  NQZ98_RS10340 (NQZ98_10340) - 2038883..2039485 (+) 603 WP_257116637.1 NADPH-dependent FMN reductase -
  NQZ98_RS10345 (NQZ98_10345) - 2039500..2040735 (+) 1236 WP_024395770.1 NAD(P)H-dependent oxidoreductase -
  NQZ98_RS10350 (NQZ98_10350) - 2041024..2041818 (+) 795 WP_024388513.1 formate/nitrite transporter family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49859.33 Da        Isoelectric Point: 6.1911

>NTDB_id=714599 NQZ98_RS10325 WP_024393368.1 2036348..2037715(-) (radA) [Streptococcus suis strain M106471_S40]
MTIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=714599 NQZ98_RS10325 WP_024393368.1 2036348..2037715(-) (radA) [Streptococcus suis strain M106471_S40]
ATGACCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCCAAGTATCTGGGCCGTTGCCC
CAATTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTCAAGAACGAGCGGGTCAGTCTGACAGGTG
AGAAGACCCGTCCTATGAAGCTCAATGAAGTGTCGTCCATTCAAGTGGCTCGAACCAAGACCAACATGGAAGAGTTTAAC
CGCGTCCTCGGTGGCGGCGTGGTGCCGGGCAGCCTAGTTCTCATTGGAGGCGATCCAGGGATTGGCAAGTCCACCTTGCT
CCTGCAAGTATCGACCCAACTTTCGACTATTGGCACCGTCCTCTACGTGTCGGGGGAGGAGTCTGCCCAGCAGATTAAGC
TCCGTGCCGAGCGTTTGGGCGACATTGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACTGAG
ATTGAGAAAATCAAGCCGGATTTCCTGATTATCGATTCGATCCAGACTATTATGAGCCCTGACATCTCCAGCGTGCAAGG
CTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAGCTCATGCAGATTGCCAAGACCAACAACATCGCAACCTTTATCGTCG
GCCACATGACCAAGGAAGGGACCCTGGCTGGACCGCGGACCTTGGAGCATATGGTAGATACCGTTCTCTATTTTGAGGGC
GAGCGGCAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGCTCTACCAACGAAATCGGCATTTTTGAAAT
GCAGTCACAGGGCTTGGTCGAAGTCCTCAATCCCAGCGAGGTCTTTCTGGAAGAGCGTCTGGACGGAGCGACTGGCTCGG
CTATTGTCGTGACCATGGAGGGCACCCGCCCCATCCTTGCGGAAGTGCAGGCTCTGGTGACGCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGATTTCAATCGTGCCAGCTTGATTATGGCAGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTTAAGTCAGCAGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTAGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGACAAGCCAACCAACCCACAAGAGTGCTTTATAGGCGAAATCGGTCTGACAGGGGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAATTGGGCTTTACCAAGGTCTATGCCCCCAAAAA
TTCCCTGACAGGTATCAAGGTGCCCAAGGAAATCACCGTTATCGGCGTGACCACCATTGGCGAAGTCTTGCAGAAAGTGT
TCAACTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8DEI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.372

99.341

0.908
  radA Streptococcus pneumoniae Rx1

91.15

99.341

0.905
  radA Streptococcus pneumoniae D39

91.15

99.341

0.905
  radA Streptococcus pneumoniae R6

91.15

99.341

0.905
  radA Streptococcus pneumoniae TIGR4

91.15

99.341

0.905
  radA Streptococcus mitis SK321

90.929

99.341

0.903
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.56

0.624