Detailed information NTG0714598

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: NQZ98_RS09925
• Genome accession: NZ_CP102135
• Coordinates: 1955652..1958102 (-)
• Length: 816 a.a.
• NCBI ID: WP_171997167.1
• Uniprot ID: A0A9Q5G358
• Organism: Streptococcus suis strain M106471_S40
• Function: degradation of ComW (predicted from homology) Competence regulation

Genomic Context

Location: 1950652..1963102

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NQZ98_RS09910 (NQZ98_09910)	hslO	1953108..1953974 (+)	867	WP_141590737.1	Hsp33 family molecular chaperone HslO	-
NQZ98_RS09915 (NQZ98_09915)	dusB	1953967..1954971 (+)	1005	WP_141590738.1	tRNA dihydrouridine synthase DusB	-
NQZ98_RS09920 (NQZ98_09920)	-	1955066..1955557 (-)	492	WP_141590740.1	adenylyltransferase/cytidyltransferase family protein	-
NQZ98_RS09925 (NQZ98_09925)	clpC	1955652..1958102 (-)	2451	WP_171997167.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
NQZ98_RS09930 (NQZ98_09930)	-	1958106..1958564 (-)	459	WP_024407980.1	CtsR family transcriptional regulator	-
NQZ98_RS09935 (NQZ98_09935)	traF	1958836..1959174 (+)	339	WP_044756248.1	conjugal transfer protein TraF	-
NQZ98_RS09940 (NQZ98_09940)	tsf	1959449..1960489 (-)	1041	WP_002937816.1	translation elongation factor Ts	-
NQZ98_RS09945 (NQZ98_09945)	rpsB	1960757..1961533 (-)	777	WP_012775356.1	30S ribosomal protein S2	-

Sequence

Protein

• Length: 816 a.a.
• Molecular weight: 90325.87 Da
• Isoelectric Point: 6.2905

>NTDB_id=714598 NQZ98_RS09925 WP_171997167.1 1955652..1958102(-) (clpC) [Streptococcus suis strain M106471_S40]
MKISTGLQRVFEDAQLVAQRYACDYLETWHVLLSLVINHDTVAGAVLAEYPISISDYEHATFVVTDKVYREELDSFRILP
SSKRLDETASFAKKIAEVVKDKELGTEHLFMAMLLDKRSTASQILDKVGFCFEDSDDKFRFLDLRKNLEARAGFTKEDLK
AIRSVMKGGKAKPTNMGQMMGMPPAPQSGGLEDYTRDLTALAREGKIEPVIGRDAEIARMIQILSRKTKNNPVLVGDAGV
GKTALALGLAQRVAAGDVPVSLAKMRVLELDLMNVIAGTRFRGDFEERMNNIINDIEEDGQVILFIDELHTIMGSGSGID
STLDAANILKPALARGTLRTVGATTQTEYQKHIEKDAALVRRFAKVTIEEPTVEDSIAILTGLKGTFEKYHRVRIGQAAV
ETAVTYAKRYLTSKNLPDSAIDLLDEASATVQNRVKGQAEETGLTSIDKALMDKKYKTVSKLLIKTKEDAEASQNYDLEV
TEEDVLETLSRLSGIPVAKLSQSDTKKYLNLEAELHKRVIGQEEAISAVSRAIRRNQSGIRTGRRPIGSFMFLGPTGVGK
TELAKALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLL
QVLDDGVLTDSKGRKVDFSNTIIIMTSNLGATALRDDKTVGFGALDLSKDHKEVEKRIFEELKKAYRPEFINRIDEKVVF
HSLTETHMQDVVKVMIKPLLAVTAEKGITLKLQPSALKLLAKQGYDPEMGARPLRRLLQTKLEDPLAEMLLRGDLTTGST
LKVGVKGEGLKFDVVK

Nucleotide

• Length: 2451 bp

>NTDB_id=714598 NQZ98_RS09925 WP_171997167.1 1955652..1958102(-) (clpC) [Streptococcus suis strain M106471_S40]
ATGAAAATTTCAACTGGTTTACAGCGGGTTTTTGAAGATGCCCAGTTAGTGGCTCAACGTTATGCCTGTGATTACTTGGA
AACCTGGCATGTTCTCTTGTCTCTCGTTATCAACCATGATACAGTCGCTGGCGCTGTTTTGGCAGAATATCCTATTTCAA
TTTCTGACTATGAACATGCAACTTTTGTTGTGACCGACAAGGTCTATCGTGAAGAGTTGGATAGTTTTCGTATTTTACCA
TCTTCTAAACGTTTGGATGAAACGGCTAGTTTTGCCAAGAAAATTGCAGAAGTCGTCAAGGATAAGGAGCTGGGAACGGA
ACATTTGTTTATGGCTATGTTGTTGGACAAGCGGTCAACAGCTAGTCAGATTTTGGACAAGGTAGGTTTTTGTTTTGAAG
ACTCAGATGATAAGTTTCGTTTCTTGGATTTGCGTAAAAACTTGGAGGCACGTGCGGGATTTACCAAAGAGGACCTTAAA
GCTATCCGCAGTGTGATGAAGGGTGGCAAAGCCAAACCTACTAATATGGGACAGATGATGGGAATGCCCCCAGCACCTCA
AAGTGGTGGATTAGAAGACTACACTCGTGATTTGACAGCTTTGGCGCGTGAAGGGAAGATTGAACCTGTTATCGGTCGAG
ACGCTGAGATTGCACGGATGATCCAAATTCTATCACGTAAAACCAAGAATAACCCAGTTCTAGTTGGTGATGCTGGTGTC
GGAAAAACTGCGCTTGCTTTGGGTCTTGCTCAACGTGTTGCTGCAGGTGATGTCCCTGTCAGCTTGGCTAAGATGCGGGT
TTTGGAACTTGACTTGATGAACGTTATCGCTGGAACTCGTTTCCGTGGTGATTTCGAAGAGCGGATGAATAATATCATCA
ACGACATTGAGGAAGATGGTCAAGTCATCCTCTTCATTGATGAGTTGCATACCATTATGGGTTCTGGCTCGGGGATTGAT
TCGACCTTGGATGCAGCCAATATCCTCAAACCAGCTCTTGCTCGTGGCACCCTCCGTACGGTCGGAGCGACGACTCAGAC
AGAGTACCAAAAGCATATTGAGAAAGACGCAGCCCTGGTTCGTCGTTTTGCCAAAGTGACCATTGAAGAGCCGACAGTGG
AAGATAGTATTGCCATTTTGACAGGGCTTAAAGGTACTTTTGAGAAATACCACAGGGTCCGTATTGGACAAGCAGCTGTA
GAGACTGCTGTGACCTACGCTAAGCGGTATTTGACCAGTAAAAACCTGCCAGATTCAGCCATTGATCTGCTGGATGAAGC
CAGTGCAACGGTACAAAATCGAGTGAAAGGGCAGGCTGAGGAAACAGGACTGACGAGCATAGACAAGGCCTTGATGGATA
AAAAATATAAGACTGTCAGCAAGCTTTTGATTAAAACGAAAGAAGATGCCGAGGCTAGTCAAAACTATGACCTTGAAGTA
ACAGAAGAAGATGTTTTAGAAACACTTAGCCGCTTGTCAGGTATCCCAGTAGCCAAGCTTAGCCAATCAGATACTAAGAA
GTATCTGAATCTGGAAGCAGAATTGCATAAGCGTGTGATTGGGCAGGAAGAAGCTATTTCTGCTGTTAGCAGAGCTATTC
GTCGTAATCAGTCAGGGATTCGTACAGGTCGCAGACCGATTGGTTCCTTTATGTTCTTGGGACCGACTGGTGTCGGTAAG
ACAGAGCTTGCTAAAGCCTTGGCAGAGGTTCTCTTTGATGATGAATCTGCTCTTATCCGTTTTGATATGTCTGAGTATAT
GGAGAAATTTGCGGCCAGCCGTCTCAATGGAGCGCCTCCAGGCTACGTGGGCTATGAAGAAGGTGGCGAATTGACAGAAA
AAGTTCGTAACAAACCTTATTCTGTTCTTCTTTTTGATGAGGTTGAAAAGGCTCATCCAGATATTTTCAATGTTCTCTTG
CAGGTCTTGGATGATGGTGTTCTGACGGACAGTAAGGGACGTAAGGTTGATTTCTCAAATACTATTATTATCATGACGTC
AAACCTTGGAGCAACAGCCCTTCGTGATGATAAGACAGTTGGTTTTGGTGCCCTTGATTTATCTAAGGACCACAAGGAAG
TGGAGAAACGCATTTTTGAGGAATTGAAAAAAGCCTATCGTCCAGAATTTATCAACCGTATTGATGAGAAAGTTGTCTTC
CATAGCCTAACGGAAACTCATATGCAGGATGTTGTCAAGGTCATGATTAAACCTTTGTTGGCTGTAACAGCTGAGAAAGG
AATTACTCTTAAACTGCAACCGTCAGCCCTTAAGTTATTGGCTAAACAAGGTTATGACCCAGAAATGGGAGCTCGTCCGC
TACGTAGGCTCTTACAAACCAAATTGGAAGATCCGTTGGCAGAAATGTTACTCCGTGGTGACTTGACTACTGGTTCGACC
TTGAAGGTTGGGGTCAAGGGTGAAGGGCTCAAGTTTGATGTGGTAAAATAG

Domains

Predicted by InterproScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (233-365)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (723-803)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (93-129)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (14-56)

• AAA lid domain (AAA_lid_9) (372-457)

• AAA domain (Cdc48 subfamily) (AAA_2) (545-716)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus pneumoniae Rx1	71.779	99.877	0.717
clpC	Streptococcus pneumoniae D39	71.779	99.877	0.717
clpC	Streptococcus pneumoniae TIGR4	71.779	99.877	0.717
clpC	Streptococcus mutans UA159	66.585	99.755	0.664
clpC	Streptococcus thermophilus LMD-9	63.842	100	0.656
clpC	Streptococcus thermophilus LMG 18311	64.26	100	0.654
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	49.222	100	0.504
clpC	Bacillus subtilis subsp. subtilis str. 168	43.442	100	0.442