Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   NQZ98_RS09395 Genome accession   NZ_CP102135
Coordinates   1847228..1847962 (-) Length   244 a.a.
NCBI ID   WP_024408312.1    Uniprot ID   -
Organism   Streptococcus suis strain M106471_S40     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1842228..1852962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ98_RS09370 (NQZ98_09370) nusA 1842455..1843597 (-) 1143 WP_044677888.1 transcription termination factor NusA -
  NQZ98_RS09375 (NQZ98_09375) rimP 1843671..1844141 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  NQZ98_RS09380 (NQZ98_09380) trmB 1844712..1845350 (-) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  NQZ98_RS09385 (NQZ98_09385) ccrZ 1845347..1846141 (-) 795 WP_002942360.1 cell cycle regulator CcrZ -
  NQZ98_RS09390 (NQZ98_09390) - 1846191..1847231 (-) 1041 WP_024408311.1 ABC transporter permease -
  NQZ98_RS09395 (NQZ98_09395) pptA 1847228..1847962 (-) 735 WP_024408312.1 ABC transporter ATP-binding protein Regulator
  NQZ98_RS09400 (NQZ98_09400) - 1848025..1848438 (+) 414 WP_024385169.1 HIT family protein -
  NQZ98_RS09405 (NQZ98_09405) - 1848440..1848742 (+) 303 WP_024395377.1 hypothetical protein -
  NQZ98_RS09410 (NQZ98_09410) - 1849008..1850201 (-) 1194 WP_044677647.1 LCP family protein -
  NQZ98_RS09415 (NQZ98_09415) - 1850198..1850725 (-) 528 WP_002939196.1 GNAT family N-acetyltransferase -
  NQZ98_RS09420 (NQZ98_09420) tsaE 1850718..1851158 (-) 441 WP_024389464.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  NQZ98_RS09425 (NQZ98_09425) - 1851260..1852924 (-) 1665 WP_024389465.1 DAK2 domain-containing protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26845.10 Da        Isoelectric Point: 4.3606

>NTDB_id=714594 NQZ98_RS09395 WP_024408312.1 1847228..1847962(-) (pptA) [Streptococcus suis strain M106471_S40]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIP
ETPSLYEELNLKEHLEVVAMAYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLIALLEEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=714594 NQZ98_RS09395 WP_024408312.1 1847228..1847962(-) (pptA) [Streptococcus suis strain M106471_S40]
ATGTTAGAAGTAAAAAATGTAACTGGAGGATATGTCAATATCCCAGTTTTGAAAGATGTATCTTTTACCGTTGAGGATGG
TCAATTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACAACTATTAAGGAAATTATCGGTCTTTTGACCCCCT
ATCAAGGACAGATTGCAATTGACGGCCTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAGATTGGGTTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAAACCTCAAAGAACACTTGGAAGTGGTAGCAATGGCCTATGATTTATCCTGGGA
GCAAGCTTGGGGACGTGTTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAGAAATTGGACTGGTTTCCTGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTGTTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCTGTGGCTATCTCTGACTTGATCGCTCTTTTGGAGGAAGAAAAATCTAAGGGCACTTCAATCCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTTCGTGCAACTG
GAAATTTGGAGGAGCTACAAAGCGCATTTGGTATGGATGGTGCAAGTCTGAATGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

74.895

97.951

0.734
  pptA Streptococcus thermophilus LMD-9

73.222

97.951

0.717