Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   NQZ98_RS08630 Genome accession   NZ_CP102135
Coordinates   1696399..1697448 (-) Length   349 a.a.
NCBI ID   WP_014638484.1    Uniprot ID   -
Organism   Streptococcus suis strain M106471_S40     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1691399..1702448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ98_RS08610 (NQZ98_08610) trpB 1691867..1693042 (-) 1176 WP_024406670.1 tryptophan synthase subunit beta -
  NQZ98_RS08615 (NQZ98_08615) - 1693925..1694452 (-) 528 WP_105120065.1 VanZ family protein -
  NQZ98_RS08620 (NQZ98_08620) rlmN 1694449..1695561 (-) 1113 WP_012028433.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  NQZ98_RS08625 (NQZ98_08625) - 1695570..1696211 (-) 642 WP_014638483.1 YutD-like domain-containing protein -
  NQZ98_RS08630 (NQZ98_08630) sepM 1696399..1697448 (-) 1050 WP_014638484.1 SepM family pheromone-processing serine protease Regulator
  NQZ98_RS08635 (NQZ98_08635) coaD 1697435..1697923 (-) 489 WP_002939048.1 pantetheine-phosphate adenylyltransferase -
  NQZ98_RS08640 (NQZ98_08640) rsmD 1697913..1698452 (-) 540 WP_024388284.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  NQZ98_RS08645 (NQZ98_08645) - 1698760..1699482 (-) 723 WP_044675079.1 serine protease -
  NQZ98_RS08650 (NQZ98_08650) - 1699539..1699925 (-) 387 WP_004194735.1 rhodanese-like domain-containing protein -
  NQZ98_RS08655 (NQZ98_08655) - 1699925..1700143 (-) 219 WP_004194736.1 YqgQ family protein -
  NQZ98_RS08660 (NQZ98_08660) - 1700248..1700847 (-) 600 WP_171997189.1 response regulator transcription factor -
  NQZ98_RS08665 (NQZ98_08665) - 1700844..1701938 (-) 1095 WP_171997188.1 sensor histidine kinase -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 37719.70 Da        Isoelectric Point: 4.4261

>NTDB_id=714591 NQZ98_RS08630 WP_014638484.1 1696399..1697448(-) (sepM) [Streptococcus suis strain M106471_S40]
MKKNRKLTLIASIVLGTLLIWFAVFVRLPYYLESPGGAADIRQVLTVNNQIDQEDGSYNFTYVSVQQATALQLFAAQFDP
YTTVRSSEEMTGGADNEEYFRIAQFYMETSQNMAKYQGLTLAGKEVNLDFFGVYVLALADDSTFKKVLNIADTVVSINGK
TFESSPDLIKYVSGLELGSDVTVGYISAGQEKSADGKIIKLSNGKNGIGITLVDHTEVQSSIPIDFQTGDIGGPSAGLMF
TLAIYTQLAEPDLRDGRIIAGTGTIEQDGKVGDIGGADKKVISAAKSGASIFFVPNNPVDVEVLKEDPKAKTNYEEAKEA
AEKAGLDIEVVPVKTVQEAIDYLKKTKGE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=714591 NQZ98_RS08630 WP_014638484.1 1696399..1697448(-) (sepM) [Streptococcus suis strain M106471_S40]
ATGAAGAAAAATAGGAAGTTAACCTTAATTGCATCTATTGTTTTAGGAACTCTTTTGATTTGGTTTGCCGTTTTTGTTCG
TCTGCCTTATTATTTGGAAAGTCCAGGTGGAGCTGCCGATATTCGTCAGGTACTAACGGTGAACAATCAAATAGACCAAG
AGGATGGATCTTACAACTTCACCTATGTATCAGTCCAACAAGCTACAGCTTTACAACTATTCGCTGCTCAGTTTGATCCC
TATACGACAGTTCGTTCCTCTGAAGAGATGACAGGAGGGGCCGACAATGAAGAGTATTTCCGTATAGCACAATTTTACAT
GGAGACATCGCAAAATATGGCCAAGTACCAAGGTTTGACCTTGGCAGGAAAAGAAGTCAATCTTGATTTCTTTGGTGTCT
ATGTACTTGCCTTGGCGGATGATTCGACCTTTAAAAAAGTTCTTAATATTGCCGACACTGTTGTGAGTATCAATGGAAAA
ACATTTGAGTCTTCTCCTGATTTGATTAAATATGTGAGTGGCTTGGAACTTGGAAGTGATGTGACAGTTGGTTATATTAG
CGCTGGTCAGGAAAAATCTGCGGACGGTAAGATTATCAAATTGTCTAATGGCAAAAATGGGATAGGCATCACTCTCGTAG
ATCATACAGAGGTTCAAAGTTCGATTCCGATTGATTTCCAAACGGGAGATATTGGTGGTCCAAGTGCTGGTCTGATGTTT
ACACTTGCCATCTATACTCAACTCGCAGAGCCTGACTTACGTGATGGTCGAATTATTGCTGGTACGGGGACTATCGAGCA
GGATGGAAAAGTAGGTGACATTGGTGGGGCTGATAAGAAAGTTATTTCAGCAGCTAAGTCAGGTGCAAGTATCTTTTTCG
TACCAAATAATCCAGTTGATGTGGAAGTTTTGAAGGAAGATCCAAAGGCTAAAACCAACTATGAGGAAGCTAAAGAAGCT
GCGGAGAAAGCAGGTCTAGATATTGAGGTAGTTCCTGTGAAAACTGTTCAAGAGGCTATTGATTATTTGAAGAAAACGAA
GGGCGAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

60.807

99.427

0.605