Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   NQZ98_RS01300 Genome accession   NZ_CP102135
Coordinates   236770..237483 (+) Length   237 a.a.
NCBI ID   WP_024402907.1    Uniprot ID   A0A0N0VCC1
Organism   Streptococcus suis strain M106471_S40     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 231770..242483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ98_RS01290 (NQZ98_01290) treC 232835..234460 (-) 1626 WP_172039847.1 alpha,alpha-phosphotrehalase -
  NQZ98_RS01295 (NQZ98_01295) treP 234541..236535 (-) 1995 WP_053866905.1 PTS system trehalose-specific EIIBC component -
  NQZ98_RS01300 (NQZ98_01300) treR 236770..237483 (+) 714 WP_024402907.1 trehalose operon repressor Regulator
  NQZ98_RS01305 (NQZ98_01305) - 237541..237852 (+) 312 WP_002935948.1 hypothetical protein -
  NQZ98_RS01310 (NQZ98_01310) - 237849..238397 (+) 549 WP_024400390.1 CvpA family protein -
  NQZ98_RS01315 (NQZ98_01315) - 238887..241220 (+) 2334 WP_024400389.1 endonuclease MutS2 -
  NQZ98_RS01320 (NQZ98_01320) - 241386..241778 (+) 393 WP_024400388.1 DUF1310 family protein -
  NQZ98_RS01325 (NQZ98_01325) - 241771..242034 (+) 264 WP_024400387.1 hypothetical protein -
  NQZ98_RS01330 (NQZ98_01330) - 242060..242449 (+) 390 WP_002935938.1 DUF1310 family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27200.07 Da        Isoelectric Point: 6.7422

>NTDB_id=714566 NQZ98_RS01300 WP_024402907.1 236770..237483(+) (treR) [Streptococcus suis strain M106471_S40]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQELYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=714566 NQZ98_RS01300 WP_024402907.1 236770..237483(+) (treR) [Streptococcus suis strain M106471_S40]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAGAGCTCCCTACC
GACAGAACAACAGCTCCAGGAACTCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCTTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCACTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCGATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAACAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0N0VCC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515