Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   NQU90_RS01690 Genome accession   NZ_CP102108
Coordinates   349273..350712 (+) Length   479 a.a.
NCBI ID   WP_005356667.1    Uniprot ID   -
Organism   Aeromonas veronii strain GD21SC2322TT     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 344273..355712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQU90_RS01660 (NQU90_01660) mlaF 344850..345650 (-) 801 WP_257124202.1 phospholipid ABC transporter ATP-binding protein MlaF -
  NQU90_RS01665 (NQU90_01665) - 345858..346853 (+) 996 WP_005336342.1 KpsF/GutQ family sugar-phosphate isomerase -
  NQU90_RS01670 (NQU90_01670) kdsC 346853..347407 (+) 555 WP_236324299.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  NQU90_RS01675 (NQU90_01675) lptC 347404..347964 (+) 561 WP_005336338.1 LPS export ABC transporter periplasmic protein LptC -
  NQU90_RS01680 (NQU90_01680) lptA 347951..348478 (+) 528 WP_257124945.1 lipopolysaccharide transport periplasmic protein LptA -
  NQU90_RS01685 (NQU90_01685) lptB 348482..349207 (+) 726 WP_005336333.1 LPS export ABC transporter ATP-binding protein -
  NQU90_RS01690 (NQU90_01690) rpoN/rpoN1 349273..350712 (+) 1440 WP_005356667.1 RNA polymerase factor sigma-54 Machinery gene
  NQU90_RS01695 (NQU90_01695) hpf 350733..351020 (+) 288 WP_005336323.1 ribosome hibernation promoting factor -
  NQU90_RS01700 (NQU90_01700) ptsN 351023..351469 (+) 447 WP_005336322.1 PTS IIA-like nitrogen regulatory protein PtsN -
  NQU90_RS01705 (NQU90_01705) rapZ 351515..352381 (+) 867 WP_108542369.1 RNase adapter RapZ -
  NQU90_RS01710 (NQU90_01710) npr 352402..352674 (+) 273 WP_005336318.1 PTS phosphocarrier protein NPr -
  NQU90_RS01715 (NQU90_01715) degS 352864..353988 (-) 1125 WP_005336297.1 outer membrane-stress sensor serine endopeptidase DegS -
  NQU90_RS01720 (NQU90_01720) - 354098..355459 (-) 1362 WP_005336295.1 Do family serine endopeptidase -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53759.67 Da        Isoelectric Point: 4.3281

>NTDB_id=714446 NQU90_RS01690 WP_005356667.1 349273..350712(+) (rpoN/rpoN1) [Aeromonas veronii strain GD21SC2322TT]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALENNPLLEQEESEAQETSPEAPVDASQLDSSDAMAQEQMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVELED
IQAAVTSDDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLDQYDPQTPWLNEAKEVILEHMELLGNRDYRTLARK
TKLKESDLKEVLDLIQLLEPRPGNGIIQSDSQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNETYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLFIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=714446 NQU90_RS01690 WP_005356667.1 349273..350712(+) (rpoN/rpoN1) [Aeromonas veronii strain GD21SC2322TT]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTTCAGCAGGAAATTCAGCAAGCGCTCGAAAACAACCCTCTGCTGGAGCAGGAAGAGAGCGAGG
CGCAAGAGACCAGTCCGGAAGCGCCGGTCGATGCCAGTCAGCTGGATTCCAGCGATGCCATGGCTCAGGAGCAGATGCCG
GACGAGTTGCCGGTGGATACCACCTGGGACGAGGTTTACTCTGCCGGCACCGCCCAAAGCGCGGGCCCCATCCATGATGG
GGAAGATAGCGTCTATCAGGGTGAAACCACCGAAAACCTGCAGGATTATCTGCTGTGGCAGATGCGGCTCACACCGTTTA
GCGATGTGGATGCCGCCATCGCGCTCGCCATCATCGATGCCATCGACGAATCCGGTTATCTGACCGTTGAGCTGGAGGAT
ATCCAGGCTGCAGTCACCAGCGATGACGTAGAGGTGGAACTCGATGAGGTCGAGGCTGTACTCAAGCGGGTTCAGCACTT
CGATCCGGTCGGCATTGCTGCCCGTTCTGTGCAGGAGTGTTTGCTGATCCAGCTGGATCAATATGACCCGCAGACCCCCT
GGCTCAACGAGGCCAAAGAGGTGATCCTCGAGCACATGGAGCTGCTCGGCAACCGGGATTACCGCACCCTCGCCCGCAAG
ACAAAACTCAAGGAGAGCGACCTCAAGGAGGTGCTGGATCTGATCCAGCTGCTGGAGCCGCGTCCCGGCAATGGCATCAT
CCAGAGCGACTCCCAGTACGTGATCCCCGACGTCTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTCGAGCTCAATCCCG
ACTCCGCCCCCCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCCCGCAACGCCCGCAGCAGCACCGACACCCAGTTT
ATCCGCTCCCATTTGCAGGAAGCCAAGTGGTTCATCAAGAGCCTGGAAAGTCGCAATGACACCCTGCTGAAAGTGGCCAG
TTGCATTGTCGAGCAGCAACAGGGCTTTTTCGAGTATGGTGAAGAGGCGATGAAGCCGATGGTGCTCAATGACATCGCCG
AAGCGGTAGAGATGCATGAGTCGACCATCTCCCGGGTGACGACCCAGAAGTACATGCATACCCCCCGTGGTATCTTCGAA
TTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCAGAGAATCCTGCCAAGCCGTTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCTAAGTATCGCGAATCCTTGTTTATCCCACCTTCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.988

100

0.491