Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   NQU59_RS13805 Genome accession   NZ_CP102099
Coordinates   2874792..2875196 (-) Length   134 a.a.
NCBI ID   WP_257063823.1    Uniprot ID   -
Organism   Acinetobacter colistiniresistens strain C-214     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2869792..2880196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQU59_RS13775 (NQU59_13775) tadA 2869913..2870422 (-) 510 WP_043969779.1 tRNA adenosine(34) deaminase TadA -
  NQU59_RS13780 (NQU59_13780) - 2870428..2871552 (-) 1125 WP_171067835.1 enoyl-CoA hydratase/isomerase family protein -
  NQU59_RS13785 (NQU59_13785) ung 2871549..2872262 (-) 714 WP_005241875.1 uracil-DNA glycosylase -
  NQU59_RS13790 (NQU59_13790) - 2872308..2872904 (-) 597 WP_005241876.1 6-carboxytetrahydropterin synthase -
  NQU59_RS13795 (NQU59_13795) gspK 2873012..2874007 (-) 996 WP_257063821.1 type II secretion system minor pseudopilin GspK -
  NQU59_RS13800 (NQU59_13800) xcpW 2874004..2874795 (-) 792 WP_257063822.1 type II secretion system minor pseudopilin GspJ Machinery gene
  NQU59_RS13805 (NQU59_13805) xcpV 2874792..2875196 (-) 405 WP_257063823.1 type II secretion system minor pseudopilin GspI Machinery gene
  NQU59_RS13810 (NQU59_13810) - 2875381..2875929 (-) 549 WP_043969775.1 Tfp pilus assembly protein FimT/FimU -
  NQU59_RS13815 (NQU59_13815) - 2875941..2876549 (-) 609 WP_004757931.1 TetR/AcrR family transcriptional regulator -
  NQU59_RS13820 (NQU59_13820) - 2876590..2877363 (-) 774 WP_005241885.1 TatD family hydrolase -
  NQU59_RS13825 (NQU59_13825) - 2877388..2877732 (-) 345 WP_005241886.1 PilZ domain-containing protein -
  NQU59_RS13830 (NQU59_13830) - 2878076..2878552 (+) 477 WP_257063824.1 hypothetical protein -
  NQU59_RS13835 (NQU59_13835) - 2878577..2879785 (-) 1209 WP_005202188.1 IS256-like element ISAba26 family transposase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14989.30 Da        Isoelectric Point: 10.2152

>NTDB_id=714413 NQU59_RS13805 WP_257063823.1 2874792..2875196(-) (xcpV) [Acinetobacter colistiniresistens strain C-214]
MKRCFTNPRSGFTLLEVMVALAIFAVAAIALTKVAMQYTQSTANAILRTKAQFVAMNEVARMEINQEWLDGTQSKQVTSQ
GETWQIDKKAQSTISPKIQRIELQVSLFNNEQGKVEAGVTNLVFFNYPAKARTQ

Nucleotide


Download         Length: 405 bp        

>NTDB_id=714413 NQU59_RS13805 WP_257063823.1 2874792..2875196(-) (xcpV) [Acinetobacter colistiniresistens strain C-214]
GTGAAACGTTGTTTCACTAACCCTCGTTCAGGATTTACCTTACTCGAAGTAATGGTGGCTTTGGCGATTTTTGCCGTGGC
TGCCATCGCATTAACGAAAGTCGCGATGCAATATACGCAATCGACAGCAAATGCAATCTTAAGGACAAAGGCACAATTTG
TCGCAATGAATGAAGTGGCAAGGATGGAAATCAATCAGGAATGGCTGGACGGGACACAATCCAAGCAAGTGACTTCGCAA
GGCGAAACGTGGCAAATTGACAAAAAAGCACAATCTACCATTAGCCCGAAGATACAACGCATCGAGTTACAAGTCAGTTT
ATTTAATAATGAACAAGGGAAGGTTGAAGCGGGTGTTACTAATCTTGTGTTCTTTAACTATCCAGCAAAGGCTAGAACAC
AATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)

Type II secretion system (T2SS), protein I (T2SSI)

(48-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

82.787

91.045

0.754