Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   NQU59_RS06300 Genome accession   NZ_CP102099
Coordinates   1298578..1299384 (+) Length   268 a.a.
NCBI ID   WP_257065338.1    Uniprot ID   -
Organism   Acinetobacter colistiniresistens strain C-214     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1293578..1304384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQU59_RS06275 (NQU59_06275) - 1294506..1295777 (+) 1272 WP_257066188.1 glycosyltransferase family 1 protein -
  NQU59_RS06280 (NQU59_06280) - 1295817..1296368 (+) 552 WP_257065337.1 phosphatase PAP2 family protein -
  NQU59_RS06285 (NQU59_06285) iscX 1296464..1296664 (+) 201 WP_004652532.1 Fe-S cluster assembly protein IscX -
  NQU59_RS06290 (NQU59_06290) ndk 1296773..1297204 (+) 432 WP_004652531.1 nucleoside-diphosphate kinase -
  NQU59_RS06295 (NQU59_06295) rlmN 1297326..1298561 (+) 1236 WP_151837756.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  NQU59_RS06300 (NQU59_06300) pilF 1298578..1299384 (+) 807 WP_257065338.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  NQU59_RS06305 (NQU59_06305) - 1299375..1300169 (+) 795 WP_005244327.1 helix-turn-helix domain-containing protein -
  NQU59_RS06310 (NQU59_06310) ispG 1300192..1301307 (+) 1116 WP_005244326.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  NQU59_RS06315 (NQU59_06315) hisS 1301304..1302596 (+) 1293 WP_257065339.1 histidine--tRNA ligase -
  NQU59_RS06320 (NQU59_06320) - 1302626..1303324 (+) 699 WP_043971081.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 30348.18 Da        Isoelectric Point: 9.4532

>NTDB_id=714408 NQU59_RS06300 WP_257065338.1 1298578..1299384(+) (pilF) [Acinetobacter colistiniresistens strain C-214]
MNTTRTKTITVTAVVFTLFGLTACQSPSTGLKKDPEKAVQVRTQLAAEYIRSRDLDSAKRSLDQALKVDSRDANANMMMG
ILLQQEGSASNMEKAEAYFKRAISSEPDNAQARNNYGTYLYQQQRYNEAIEQFTRAGATLGYDQRFQSLENLGRIYLKLG
DVANAEKSLKQALQANRNATISMLELAEIFYLQQNNRDASQLYEQYVRNVGQNNQGARALWIGLRIARANADQLGMQVLV
NQLRALFPDSPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=714408 NQU59_RS06300 WP_257065338.1 1298578..1299384(+) (pilF) [Acinetobacter colistiniresistens strain C-214]
TTGAATACCACTCGAACAAAAACCATTACTGTGACGGCTGTTGTGTTTACTTTGTTTGGCTTAACAGCTTGTCAATCGCC
TTCTACAGGATTAAAAAAAGATCCAGAAAAAGCAGTTCAAGTTCGAACACAGCTGGCTGCAGAATATATTCGTAGCCGTG
ATCTAGATTCGGCCAAACGTTCGCTTGATCAAGCGTTAAAAGTGGACTCTCGTGATGCCAATGCCAATATGATGATGGGC
ATCTTGCTGCAACAAGAAGGCAGTGCAAGCAATATGGAAAAAGCAGAGGCTTATTTTAAGCGTGCGATTTCCTCAGAACC
TGATAATGCTCAAGCGCGTAATAATTACGGTACATATTTGTATCAGCAGCAACGCTATAATGAAGCGATTGAGCAATTTA
CCCGTGCGGGTGCAACGCTAGGCTATGATCAACGATTTCAGTCGTTGGAAAACCTGGGACGAATCTATTTAAAATTGGGC
GATGTTGCGAATGCTGAAAAATCACTCAAACAAGCGCTACAAGCGAATCGAAACGCAACCATTTCAATGTTAGAGTTGGC
GGAAATTTTCTATTTGCAACAAAATAATAGAGATGCGTCACAACTATACGAACAATATGTTCGTAATGTAGGGCAGAACA
ACCAAGGTGCTCGTGCGCTTTGGATTGGTCTACGCATTGCTCGAGCGAATGCGGATCAATTAGGAATGCAGGTACTGGTT
AATCAACTACGTGCTCTATTTCCTGATAGTCCAGAATATCAACGTTATTTGCAATTACAGTACAGTACTGAGGCCGTATG
GAAATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_16)

(89-136)

Tetratricopeptide repeat (TPR_16)

(151-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

78.358

100

0.784
  pilF Acinetobacter baylyi ADP1

68.797

99.254

0.683