Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | AFERRID_RS03530 | Genome accession | NZ_AP018795 |
| Coordinates | 686000..687031 (-) | Length | 343 a.a. |
| NCBI ID | WP_126604360.1 | Uniprot ID | A0A5J6VWQ9 |
| Organism | Acidithiobacillus ferridurans strain JCM 18981 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 681000..692031
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AFERRID_RS03500 (AFERRID_06990) | hslV | 681208..681747 (+) | 540 | WP_113525989.1 | ATP-dependent protease subunit HslV | - |
| AFERRID_RS03505 (AFERRID_07000) | hslU | 681750..683071 (+) | 1322 | Protein_685 | ATP-dependent protease ATPase subunit HslU | - |
| AFERRID_RS03510 (AFERRID_07010) | - | 683096..683428 (-) | 333 | WP_113525987.1 | hypothetical protein | - |
| AFERRID_RS03515 (AFERRID_07020) | rpoH | 683425..684285 (-) | 861 | WP_113525986.1 | RNA polymerase sigma factor RpoH | - |
| AFERRID_RS03520 (AFERRID_07030) | ftsX | 684430..685335 (-) | 906 | WP_113525985.1 | permease-like cell division protein FtsX | - |
| AFERRID_RS03525 (AFERRID_07040) | ftsE | 685332..686003 (-) | 672 | WP_009568266.1 | cell division ATP-binding protein FtsE | - |
| AFERRID_RS03530 (AFERRID_07050) | pilA | 686000..687031 (-) | 1032 | WP_126604360.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| AFERRID_RS03535 (AFERRID_07060) | rsmD | 687154..687723 (+) | 570 | WP_126604361.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| AFERRID_RS03540 (AFERRID_07070) | coaD | 687716..688240 (+) | 525 | WP_113525982.1 | pantetheine-phosphate adenylyltransferase | - |
| AFERRID_RS03545 (AFERRID_07080) | - | 688269..688520 (+) | 252 | WP_126604362.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| AFERRID_RS03550 (AFERRID_07090) | - | 688504..690483 (-) | 1980 | WP_126604363.1 | dynamin family protein | - |
| AFERRID_RS03555 (AFERRID_07100) | mutM | 690500..691312 (-) | 813 | WP_126604364.1 | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | - |
Sequence
Protein
Download Length: 343 a.a. Molecular weight: 36787.18 Da Isoelectric Point: 7.3647
>NTDB_id=71439 AFERRID_RS03530 WP_126604360.1 686000..687031(-) (pilA) [Acidithiobacillus ferridurans strain JCM 18981]
MVFDWFKRNKSLPAGETFAEEALPPATVATIPEDAPKGLFSRLRQGLARSREQLAGGVGRLVLGKKVIDADLLEDLEALL
LQADLGSAATREVMDSVTERVRRKELTDPAALQAALRESLLDILRPRAQPWSPEKGHSQVLLMVGINGAGKTTTIGKLAA
RWKAEGFTVVLAAGDTFRAAAVEQLQGWGRRAQVPVVAQGTGADSASVIFDALTTTRARGNDLLIADTAGRLHTQGHLME
ELKKIRRVLGKQDPEAPQQIWLVLDAGTGQNALNQARQFHDAVGLTGICITKLDGTAKGGVVAAIAKALPIPIRYIGVGE
QVEDLRPFDPESFVDALFAESKS
MVFDWFKRNKSLPAGETFAEEALPPATVATIPEDAPKGLFSRLRQGLARSREQLAGGVGRLVLGKKVIDADLLEDLEALL
LQADLGSAATREVMDSVTERVRRKELTDPAALQAALRESLLDILRPRAQPWSPEKGHSQVLLMVGINGAGKTTTIGKLAA
RWKAEGFTVVLAAGDTFRAAAVEQLQGWGRRAQVPVVAQGTGADSASVIFDALTTTRARGNDLLIADTAGRLHTQGHLME
ELKKIRRVLGKQDPEAPQQIWLVLDAGTGQNALNQARQFHDAVGLTGICITKLDGTAKGGVVAAIAKALPIPIRYIGVGE
QVEDLRPFDPESFVDALFAESKS
Nucleotide
Download Length: 1032 bp
>NTDB_id=71439 AFERRID_RS03530 WP_126604360.1 686000..687031(-) (pilA) [Acidithiobacillus ferridurans strain JCM 18981]
ATGGTGTTCGACTGGTTCAAGCGTAACAAAAGCCTCCCTGCGGGGGAAACGTTCGCCGAAGAGGCATTGCCCCCTGCCAC
TGTGGCGACTATCCCGGAAGACGCCCCCAAGGGACTTTTCTCCCGTCTTCGGCAAGGTCTGGCCCGCAGCCGGGAACAAC
TGGCCGGGGGTGTAGGGCGTCTGGTACTTGGTAAAAAGGTGATCGATGCGGATCTGCTGGAAGATCTGGAAGCCCTACTG
CTACAGGCGGATCTCGGCAGCGCCGCAACCCGGGAAGTCATGGACAGCGTCACGGAACGGGTGCGTCGCAAGGAGCTCAC
GGACCCCGCCGCGCTCCAGGCGGCACTGCGCGAGTCGCTTCTGGATATCCTGCGTCCCCGCGCACAACCCTGGTCGCCCG
AGAAGGGGCATTCTCAGGTGTTGCTCATGGTCGGTATCAACGGCGCGGGCAAAACGACCACCATCGGTAAACTGGCGGCA
CGCTGGAAAGCGGAAGGTTTCACGGTAGTGCTTGCTGCTGGCGACACCTTCCGCGCCGCTGCCGTCGAGCAGTTGCAGGG
CTGGGGGAGGCGCGCGCAGGTGCCGGTGGTGGCGCAGGGTACGGGCGCTGACAGCGCCTCCGTGATTTTCGATGCGCTGA
CCACGACCCGCGCGCGTGGCAACGACCTGCTCATCGCCGATACCGCCGGGCGCCTCCATACCCAGGGCCATCTCATGGAA
GAGCTGAAGAAGATCAGGCGGGTTCTCGGCAAACAGGACCCGGAGGCGCCGCAGCAGATCTGGCTGGTGCTGGACGCCGG
GACCGGGCAGAACGCCCTCAATCAGGCGCGTCAGTTTCATGATGCGGTGGGGCTGACAGGTATTTGCATCACCAAGCTAG
ATGGCACCGCCAAGGGGGGTGTGGTGGCGGCCATCGCCAAGGCCCTGCCCATCCCTATTCGCTACATTGGTGTCGGTGAG
CAGGTCGAAGACTTACGCCCCTTTGACCCCGAATCTTTTGTCGATGCCTTATTTGCGGAGTCGAAGTCATGA
ATGGTGTTCGACTGGTTCAAGCGTAACAAAAGCCTCCCTGCGGGGGAAACGTTCGCCGAAGAGGCATTGCCCCCTGCCAC
TGTGGCGACTATCCCGGAAGACGCCCCCAAGGGACTTTTCTCCCGTCTTCGGCAAGGTCTGGCCCGCAGCCGGGAACAAC
TGGCCGGGGGTGTAGGGCGTCTGGTACTTGGTAAAAAGGTGATCGATGCGGATCTGCTGGAAGATCTGGAAGCCCTACTG
CTACAGGCGGATCTCGGCAGCGCCGCAACCCGGGAAGTCATGGACAGCGTCACGGAACGGGTGCGTCGCAAGGAGCTCAC
GGACCCCGCCGCGCTCCAGGCGGCACTGCGCGAGTCGCTTCTGGATATCCTGCGTCCCCGCGCACAACCCTGGTCGCCCG
AGAAGGGGCATTCTCAGGTGTTGCTCATGGTCGGTATCAACGGCGCGGGCAAAACGACCACCATCGGTAAACTGGCGGCA
CGCTGGAAAGCGGAAGGTTTCACGGTAGTGCTTGCTGCTGGCGACACCTTCCGCGCCGCTGCCGTCGAGCAGTTGCAGGG
CTGGGGGAGGCGCGCGCAGGTGCCGGTGGTGGCGCAGGGTACGGGCGCTGACAGCGCCTCCGTGATTTTCGATGCGCTGA
CCACGACCCGCGCGCGTGGCAACGACCTGCTCATCGCCGATACCGCCGGGCGCCTCCATACCCAGGGCCATCTCATGGAA
GAGCTGAAGAAGATCAGGCGGGTTCTCGGCAAACAGGACCCGGAGGCGCCGCAGCAGATCTGGCTGGTGCTGGACGCCGG
GACCGGGCAGAACGCCCTCAATCAGGCGCGTCAGTTTCATGATGCGGTGGGGCTGACAGGTATTTGCATCACCAAGCTAG
ATGGCACCGCCAAGGGGGGTGTGGTGGCGGCCATCGCCAAGGCCCTGCCCATCCCTATTCGCTACATTGGTGTCGGTGAG
CAGGTCGAAGACTTACGCCCCTTTGACCCCGAATCTTTTGTCGATGCCTTATTTGCGGAGTCGAAGTCATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
54.397 |
89.504 |
0.487 |