Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   NQU59_RS01970 Genome accession   NZ_CP102099
Coordinates   416749..417075 (-) Length   108 a.a.
NCBI ID   WP_005240181.1    Uniprot ID   N9PPW4
Organism   Acinetobacter colistiniresistens strain C-214     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 411749..422075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQU59_RS01950 (NQU59_01950) - 412000..412617 (-) 618 WP_005240174.1 FHA domain-containing protein -
  NQU59_RS01955 (NQU59_01955) gspD 412681..414942 (-) 2262 WP_257064760.1 type II secretion system secretin GspD -
  NQU59_RS01960 (NQU59_01960) - 414983..415828 (-) 846 WP_096911199.1 type II secretion system protein N -
  NQU59_RS01965 (NQU59_01965) gspN 415828..416571 (-) 744 WP_096911200.1 type II secretion system protein N -
  NQU59_RS01970 (NQU59_01970) hns 416749..417075 (-) 327 WP_005240181.1 H-NS family nucleoid-associated regulatory protein Regulator
  NQU59_RS01975 (NQU59_01975) - 417461..417898 (-) 438 WP_005240183.1 thioesterase family protein -
  NQU59_RS01980 (NQU59_01980) - 417907..419100 (-) 1194 WP_257064761.1 heme biosynthesis protein HemY -
  NQU59_RS01985 (NQU59_01985) - 419107..419934 (-) 828 WP_257064762.1 hypothetical protein -
  NQU59_RS01990 (NQU59_01990) - 419931..420707 (-) 777 WP_257064763.1 uroporphyrinogen-III synthase -
  NQU59_RS01995 (NQU59_01995) hemC 420707..421624 (-) 918 WP_257066108.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12288.95 Da        Isoelectric Point: 5.0269

>NTDB_id=714380 NQU59_RS01970 WP_005240181.1 416749..417075(-) (hns) [Acinetobacter colistiniresistens strain C-214]
MKPDISDLSVEDLKRLQAEAEALIASKKDQAIEDAYNQIIAIADAIGYSVEELLEVGEQKRKKTTRKAVEPRYRNKSNTE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=714380 NQU59_RS01970 WP_005240181.1 416749..417075(-) (hns) [Acinetobacter colistiniresistens strain C-214]
ATGAAACCAGATATTAGCGATTTATCTGTAGAAGATTTAAAACGTTTACAAGCAGAAGCAGAAGCTTTGATTGCAAGCAA
AAAAGATCAAGCCATTGAAGATGCATATAATCAAATTATCGCGATTGCAGATGCGATTGGTTATAGCGTTGAAGAATTAT
TGGAAGTGGGTGAGCAAAAGCGTAAGAAAACAACGCGTAAAGCAGTAGAGCCACGTTACCGTAATAAGAGCAATACTGAA
GAGACTTGGACTGGTCGTGGTAAACAACCACGCTGGTTAGTTGCAGAATTAGAAAAAGGTGCAAAACTTGAAGATTTCCT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9PPW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

86.111

100

0.861