Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   NP165_RS19315 Genome accession   NZ_CP102097
Coordinates   1295505..1297613 (+) Length   702 a.a.
NCBI ID   WP_257086089.1    Uniprot ID   -
Organism   Vibrio japonicus strain JCM 31412     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1290505..1302613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP165_RS19305 (NP165_19305) - 1291187..1292317 (+) 1131 WP_257086087.1 exonuclease SbcCD subunit D -
  NP165_RS19310 (NP165_19310) - 1292327..1295368 (+) 3042 WP_257086088.1 SMC family ATPase -
  NP165_RS19315 (NP165_19315) cqsS 1295505..1297613 (+) 2109 WP_257086089.1 hybrid sensor histidine kinase/response regulator Regulator
  NP165_RS19320 (NP165_19320) - 1297628..1298593 (-) 966 WP_257086090.1 TDT family transporter -
  NP165_RS19325 (NP165_19325) - 1299195..1300172 (-) 978 WP_257086091.1 GTP-binding protein -
  NP165_RS19330 (NP165_19330) ylqF 1300282..1301226 (-) 945 WP_257086092.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 702 a.a.        Molecular weight: 79483.14 Da        Isoelectric Point: 6.1721

>NTDB_id=714372 NP165_RS19315 WP_257086089.1 1295505..1297613(+) (cqsS) [Vibrio japonicus strain JCM 31412]
MSKLAAGTKMQTMSGATKSAIRKVYEYAEPNLTIVGWFGLLGFPIYYYVWSYLFPQPYESALLRGTCSVLFAVLVFRNDL
PSYIHRYMPVLYLFILSLCLPFFFSYMMFKNSWSDIWAMSFLVSIFLHILLVHQTRVVLLQAAVSIAVAFSLAYGTDWNK
ATDEIVWEYVPVFMFTYVFGNLFYFRNQIEHESRVSIAKSFGASIAHEMRNPLAALKVSVEVLSSILNKHQAQRSEGISL
SQKELIMAREILDDANGVIESGNEAIDLLLTSIDQNRVSTSTFKKHSMKSIVESALVSFAYKSPQDKQSIEFKSECDFDA
FGSDTLIKYALYNLLKNSFCSKHGDGFKIDICLKKDGHYNHLIFRDNGVGIPADVIQDIFGDFYTYGRKRSSGLGLPFCK
KVMKSLGGKIACRSELGLWTEFTLSFPTYESDVVDRIKMDLMKSKSVLFIGSNGTVSRALNEHAFYKGFRLINVSVDTAA
TKEAYEFEFDLIFVDLDDSMNATDKFADLENKLHFTEAHLVYLYDQNRSYPLPVNNELRICPIEINKLSRECGSALDALF
FESPNTHMNILPHQLQQPKDYQGKTIVIADDNHSVRAYTSLLLEQQGFVVVQAKNGQDVLDTLNNQYVDLILMDIEMPSL
NGLEAAERIRQSKTEYANVPIVAHTGDNSVTFQDKLQEFGINDYIAKPSSADALINKITSWV

Nucleotide


Download         Length: 2109 bp        

>NTDB_id=714372 NP165_RS19315 WP_257086089.1 1295505..1297613(+) (cqsS) [Vibrio japonicus strain JCM 31412]
ATGAGTAAGTTGGCAGCGGGTACAAAAATGCAAACAATGAGTGGTGCGACAAAAAGTGCGATTCGAAAAGTGTATGAATA
TGCAGAGCCAAACCTAACCATCGTTGGATGGTTTGGCTTGCTTGGCTTTCCAATTTATTATTACGTTTGGTCGTATTTAT
TCCCGCAACCCTACGAAAGCGCCTTGCTAAGAGGCACTTGCTCAGTCTTGTTTGCTGTGTTGGTTTTCCGCAATGACCTT
CCTTCGTATATCCATCGGTATATGCCGGTGTTGTACTTATTTATACTGAGCCTCTGCTTGCCGTTCTTCTTCAGCTATAT
GATGTTTAAAAATAGCTGGAGTGATATTTGGGCAATGTCGTTTCTGGTTTCGATATTTCTGCATATATTGCTTGTTCATC
AAACGCGAGTGGTCCTTTTACAGGCGGCGGTGTCGATTGCGGTTGCTTTTTCGCTCGCTTATGGTACGGACTGGAATAAG
GCTACGGACGAAATTGTTTGGGAGTATGTCCCCGTATTTATGTTTACGTATGTCTTTGGCAATTTGTTTTATTTTCGCAA
TCAGATTGAGCACGAGAGTAGGGTCTCTATCGCGAAGTCTTTTGGGGCCAGTATTGCTCATGAAATGCGCAACCCTTTGG
CCGCACTTAAAGTATCAGTGGAAGTATTGAGCTCTATTCTAAATAAGCATCAGGCTCAGCGAAGCGAGGGTATCAGCTTG
TCTCAGAAAGAACTGATCATGGCGCGTGAAATTCTGGATGATGCGAATGGCGTTATAGAAAGTGGCAATGAAGCGATTGA
TCTTTTACTAACATCCATTGATCAAAATCGAGTCTCTACATCTACTTTCAAAAAGCACTCAATGAAATCTATTGTAGAAA
GCGCATTGGTCAGCTTTGCATATAAGAGCCCTCAAGATAAGCAATCCATTGAGTTTAAGAGCGAATGCGACTTCGATGCT
TTCGGTAGTGATACCTTGATCAAATACGCTCTGTACAATTTACTAAAAAATTCATTTTGTTCTAAGCATGGTGATGGTTT
TAAGATAGACATTTGTCTTAAAAAGGATGGGCATTACAATCACCTAATTTTCAGGGACAATGGTGTCGGTATCCCAGCAG
ATGTAATTCAAGATATTTTCGGTGACTTTTATACCTATGGGAGAAAGAGAAGTTCGGGACTCGGCCTTCCGTTTTGTAAG
AAAGTGATGAAGTCTCTAGGTGGGAAAATTGCGTGCCGCTCTGAATTGGGGTTGTGGACAGAGTTTACATTGAGCTTTCC
TACCTACGAATCTGATGTGGTTGATCGTATAAAAATGGATTTAATGAAGTCGAAGTCGGTACTTTTTATTGGCAGCAATG
GAACGGTATCACGCGCATTGAACGAGCATGCATTTTATAAAGGTTTTCGTTTGATCAATGTTTCTGTAGATACTGCAGCA
ACTAAAGAAGCGTACGAGTTTGAGTTCGATCTTATTTTTGTAGATCTAGATGATTCGATGAACGCTACGGATAAGTTTGC
TGATTTAGAAAACAAGCTGCACTTTACAGAAGCGCATTTAGTCTACCTTTATGATCAGAACCGTAGCTACCCGTTGCCCG
TTAATAATGAGCTTCGAATTTGTCCAATCGAGATAAATAAACTGTCAAGAGAGTGCGGTTCTGCTCTCGATGCGTTGTTT
TTTGAGTCTCCAAACACACACATGAACATACTGCCACACCAGTTACAGCAGCCGAAAGATTATCAAGGCAAAACGATTGT
TATCGCTGACGACAACCATTCAGTACGCGCCTATACCTCGCTTTTGCTAGAGCAGCAAGGGTTTGTCGTGGTTCAGGCGA
AGAATGGACAGGATGTTTTAGACACATTAAACAATCAATATGTCGATCTTATTTTGATGGATATTGAAATGCCAAGTTTG
AATGGATTAGAAGCGGCAGAGCGAATACGCCAATCTAAAACGGAATATGCCAACGTGCCGATTGTCGCACATACCGGAGA
CAACTCTGTGACATTCCAAGATAAGCTTCAAGAGTTTGGAATTAACGATTACATTGCGAAACCCTCTAGCGCAGACGCGT
TGATTAATAAGATCACTAGCTGGGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(586-698)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(327-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

50.219

97.578

0.49