Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   NP165_RS12615 Genome accession   NZ_CP102096
Coordinates   2654620..2655159 (-) Length   179 a.a.
NCBI ID   WP_306439760.1    Uniprot ID   -
Organism   Vibrio japonicus strain JCM 31412     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2649620..2660159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP165_RS12595 (NP165_12595) recG 2650261..2652339 (+) 2079 WP_257084252.1 ATP-dependent DNA helicase RecG -
  NP165_RS12600 (NP165_12600) cysQ 2652404..2653231 (-) 828 WP_257084253.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  NP165_RS12605 (NP165_12605) nudE 2653254..2653802 (-) 549 WP_257084254.1 ADP compounds hydrolase NudE -
  NP165_RS12610 (NP165_12610) nfuA 2653934..2654521 (-) 588 WP_257084255.1 Fe-S biogenesis protein NfuA -
  NP165_RS12615 (NP165_12615) comF 2654620..2655159 (-) 540 WP_306439760.1 ComF family protein Machinery gene
  NP165_RS20000 - 2655184..2655357 (-) 174 Protein_2395 hypothetical protein -
  NP165_RS12620 (NP165_12620) bioH 2655378..2656178 (+) 801 WP_257084257.1 pimeloyl-ACP methyl ester esterase BioH -
  NP165_RS12625 (NP165_12625) - 2656300..2656770 (+) 471 WP_257084258.1 ATP-dependent Lon protease -
  NP165_RS12630 (NP165_12630) - 2656869..2659193 (-) 2325 WP_257084259.1 Tex family protein -
  NP165_RS12635 (NP165_12635) greB 2659284..2659760 (-) 477 WP_257084260.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 20648.95 Da        Isoelectric Point: 9.6805

>NTDB_id=714366 NP165_RS12615 WP_306439760.1 2654620..2655159(-) (comF) [Vibrio japonicus strain JCM 31412]
METQMEVCGKCLVEPPTWQRVFCVGDYQQPISGYVHRLKYERQFWQGAKLASLLVPRIQKPAELLTSVPLHWKRQWYRGF
NQSELIALSLAKSLNRPYNNLFKRTRATSPQQGKDRAQRMRNLHDAFRLIQPVNVKHVAIVDDVLTTGSTVQHLCKLLLE
AGVETVDIYCICRTPEPTS

Nucleotide


Download         Length: 540 bp        

>NTDB_id=714366 NP165_RS12615 WP_306439760.1 2654620..2655159(-) (comF) [Vibrio japonicus strain JCM 31412]
ATGGAAACGCAGATGGAGGTTTGTGGGAAGTGTTTGGTTGAACCGCCAACATGGCAACGTGTTTTTTGTGTGGGAGACTA
CCAACAACCGATTTCTGGGTATGTTCATAGGCTTAAATATGAGCGCCAGTTCTGGCAAGGCGCCAAACTCGCCAGTTTGC
TTGTCCCAAGGATACAGAAACCAGCAGAACTTCTCACATCGGTCCCATTGCATTGGAAAAGACAATGGTACAGAGGATTT
AACCAAAGCGAACTGATTGCGTTGAGTTTGGCAAAGTCCCTAAACAGACCGTATAACAATCTGTTCAAGCGGACACGTGC
AACCTCACCCCAGCAGGGTAAAGACCGCGCCCAAAGAATGCGAAACCTGCATGATGCATTTCGATTGATTCAACCCGTAA
ATGTTAAGCATGTCGCGATTGTTGATGACGTGCTGACCACGGGGAGTACTGTGCAGCATTTATGTAAATTACTGCTTGAA
GCAGGCGTGGAAACCGTTGATATTTATTGCATCTGCCGGACTCCTGAACCGACATCCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(119-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

60.795

98.324

0.598
  comF Vibrio campbellii strain DS40M4

52.023

96.648

0.503
  comF Haemophilus influenzae 86-028NP

37.43

100

0.374
  comF Haemophilus influenzae Rd KW20

37.43

100

0.374