Detailed information NTG0714360

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: NP165_RS11050
• Genome accession: NZ_CP102096
• Coordinates: 2364674..2365636 (-)
• Length: 320 a.a.
• NCBI ID: WP_257084016.1
• Uniprot ID: -
• Organism: Vibrio japonicus strain JCM 31412
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2359674..2370636

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NP165_RS11025 (NP165_11025)	rimM	2359801..2360349 (-)	549	WP_257084012.1	ribosome maturation factor RimM	-
NP165_RS11030 (NP165_11030)	rpsP	2360376..2360624 (-)	249	WP_005438039.1	30S ribosomal protein S16	-
NP165_RS11035 (NP165_11035)	ffh	2360821..2362203 (-)	1383	WP_257084013.1	signal recognition particle protein	-
NP165_RS11040 (NP165_11040)	-	2362413..2363207 (+)	795	WP_257084014.1	inner membrane protein YpjD	-
NP165_RS11045 (NP165_11045)	-	2363328..2364605 (+)	1278	WP_257084015.1	HlyC/CorC family transporter	-
NP165_RS11050 (NP165_11050)	rpoS	2364674..2365636 (-)	963	WP_257084016.1	RNA polymerase sigma factor RpoS	Regulator
NP165_RS11055 (NP165_11055)	nlpD	2365712..2366620 (-)	909	WP_257084017.1	murein hydrolase activator NlpD	-
NP165_RS11060 (NP165_11060)	-	2366623..2367249 (-)	627	WP_257084018.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
NP165_RS11065 (NP165_11065)	surE	2367252..2368010 (-)	759	WP_257084019.1	5'/3'-nucleotidase SurE	-
NP165_RS11070 (NP165_11070)	truD	2368010..2369053 (-)	1044	WP_257084020.1	tRNA pseudouridine(13) synthase TruD	-
NP165_RS11075 (NP165_11075)	ispF	2369111..2369587 (-)	477	WP_257084021.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
NP165_RS11080 (NP165_11080)	ispD	2369591..2370295 (-)	705	WP_257084022.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
NP165_RS11085 (NP165_11085)	ftsB	2370295..2370573 (-)	279	WP_257084023.1	cell division protein FtsB	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36650.70 Da
• Isoelectric Point: 4.6370

>NTDB_id=714360 NP165_RS11050 WP_257084016.1 2364674..2365636(-) (rpoS) [Vibrio japonicus strain JCM 31412]
MSISNAATKVQELEVDKEVMDDLPIDDDQSLTKELEVSSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGDEAARKR
MIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVK
ELNIYLRTARELSQKLDHEPTAEEIASELDKPVDDVSKMLRLNERISSVDTPIGGEGEKALLDIIPDINNSDPEVSTQDD
DIKLSLIHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQGLNMESLFSVSEE

Nucleotide

• Length: 963 bp

>NTDB_id=714360 NP165_RS11050 WP_257084016.1 2364674..2365636(-) (rpoS) [Vibrio japonicus strain JCM 31412]
ATGAGTATCAGCAATGCAGCAACGAAAGTCCAAGAACTTGAAGTCGACAAGGAAGTAATGGATGATCTTCCGATAGATGA
CGATCAATCCTTAACCAAAGAACTTGAGGTTTCATCGAAAAGTCTCGATGCGACTCAACTTTATCTAGGTGAAATCGGCT
TTTCACCGCTACTCACCGCAGAAGAAGAAGTCTTGTATGCTCGTCGCGCTTTGCGCGGAGATGAAGCTGCACGTAAGCGA
ATGATCGAAAGTAATTTGCGTCTTGTGGTGAAAATATCTCGCCGATACAGCAACCGAGGTTTAGCTCTTTTAGATCTTAT
AGAAGAAGGTAACCTAGGTTTGATTCGCGCAGTTGAAAAGTTTGATCCAGAGCGAGGATTCCGTTTCTCAACGTACGCTA
CTTGGTGGATTCGTCAAACCATAGAACGTGCATTGATGAATCAGACTCGCACAATTCGACTACCTATTCATGTCGTGAAA
GAGCTGAATATCTATCTGCGTACGGCACGTGAACTTTCTCAGAAACTTGACCATGAACCTACAGCAGAAGAGATTGCATC
TGAGCTGGATAAACCGGTTGATGATGTCAGTAAAATGCTTCGCTTGAACGAGCGTATAAGCTCTGTTGATACACCAATTG
GTGGTGAAGGTGAGAAAGCGCTGCTTGATATTATTCCTGATATTAATAACTCAGACCCTGAGGTATCTACACAGGACGAC
GATATCAAACTTTCCTTGATCCACTGGCTAGATGAGCTGAATCCAAAACAAAAAGAAGTGTTAGCACGTCGATTCGGTTT
GCTTGGTTATGAACCATCTACACTTGAGGAAGTCGGGCGTGAAATTAACCTAACACGTGAGCGTGTTCGCCAGATTCAGG
TAGAGGGTCTACGTCGACTAAGAGAAATTCTGGTCAAACAAGGTTTGAATATGGAAAGCTTGTTTAGTGTCAGTGAAGAA
TAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (43-76)

• Sigma-70 region 2 (Sigma70_r2) (81-150)

• Sigma-70 region 3 (Sigma70_r3) (161-234)

• Sigma-70, region 4 (Sigma70_r4) (249-302)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.873	100	0.847