Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NP165_RS07210 Genome accession   NZ_CP102096
Coordinates   1519334..1520758 (+) Length   474 a.a.
NCBI ID   WP_257083304.1    Uniprot ID   -
Organism   Vibrio japonicus strain JCM 31412     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1514334..1525758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP165_RS07190 (NP165_07190) cobT 1514884..1515912 (-) 1029 WP_257085560.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  NP165_RS07195 (NP165_07195) - 1515918..1516529 (-) 612 WP_257083302.1 flavin reductase family protein -
  NP165_RS07200 (NP165_07200) - 1516950..1517636 (+) 687 WP_371133664.1 NAD(P)H-binding protein -
  NP165_RS07205 (NP165_07205) - 1517821..1519194 (+) 1374 WP_257083303.1 L-cystine transporter -
  NP165_RS07210 (NP165_07210) sbcB 1519334..1520758 (+) 1425 WP_257083304.1 exodeoxyribonuclease I Machinery gene
  NP165_RS07215 (NP165_07215) - 1520893..1521258 (+) 366 WP_257083305.1 CidA/LrgA family protein -
  NP165_RS07220 (NP165_07220) - 1521258..1521935 (+) 678 WP_257083306.1 LrgB family protein -
  NP165_RS07225 (NP165_07225) cdd 1522196..1523083 (+) 888 WP_257083307.1 cytidine deaminase -
  NP165_RS07230 (NP165_07230) purT 1523314..1524489 (+) 1176 WP_257083308.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  NP165_RS07235 (NP165_07235) - 1524550..1525197 (-) 648 WP_257083309.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54636.98 Da        Isoelectric Point: 4.9475

>NTDB_id=714349 NP165_RS07210 WP_257083304.1 1519334..1520758(+) (sbcB) [Vibrio japonicus strain JCM 31412]
MLQEHQPTFFFFDYETWGVSPAKDRPCQFAGVRTDMDFNIIGEPLVIYCQPPSDYLPSPEAALITGITPQTAISKGLSEP
EFIAKIHEQLATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPDGVNWPENDEGFI
SFKLEHLSVANGIEHENAHDAMADVIATIEMAKKIKAAQPKLFDYFLSMRHKRKLNELIDIVNMTPLMHVSGMLGRECNY
TSWIVPVAWHPTNKNAVITVDLAKNPQPLLDLTTEQIHERLYTKHSDLDEGELPVPVKLVHLNKCPILAPAKTLTAENAE
KIGIDREQCLKNLAILRQNPEIREKLIGLYSIEREYESNDDVDTQLYDGFFSPADKASMDIIRETDPNNLAALDISFNDQ
RIAPLLFRYRARHFPLTLDEHEQQKWANHCREYFESRIEDYMLNLENLVHDYESDEKKLAILKSVYQYVQKLVS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=714349 NP165_RS07210 WP_257083304.1 1519334..1520758(+) (sbcB) [Vibrio japonicus strain JCM 31412]
ATGCTACAAGAGCACCAACCCACGTTTTTCTTTTTTGACTATGAAACTTGGGGAGTAAGCCCTGCTAAAGATCGTCCGTG
TCAGTTTGCGGGTGTTCGCACCGATATGGACTTCAACATCATCGGCGAACCTCTTGTTATCTACTGCCAACCACCTTCGG
ATTATTTACCGTCTCCAGAAGCGGCACTGATCACCGGAATTACGCCTCAAACCGCAATCAGCAAAGGTCTATCCGAGCCA
GAATTTATCGCAAAAATTCACGAGCAACTCGCGACACCCAATACCACTAGCCTTGGTTACAACAGCATCCGATTTGATGA
TGAAGTCACGCGCTACACCTGCTACCGCAACTTTATTGATCCGTATGCGTGGAGCTGGCAAAACGGAAATTCTCGTTGGG
ATTTGCTTGATGTTATGCGCGCTTGCCACGCATTGCGCCCAGACGGAGTCAACTGGCCTGAAAACGATGAAGGCTTCATT
AGCTTTAAGCTAGAGCACCTTTCGGTTGCCAACGGCATTGAACACGAAAATGCGCACGACGCGATGGCCGATGTTATTGC
AACAATCGAGATGGCAAAGAAGATCAAAGCGGCGCAACCTAAGCTGTTCGATTACTTCCTTAGCATGCGTCATAAACGCA
AGTTGAATGAACTGATCGATATCGTCAATATGACACCGCTAATGCATGTTTCAGGCATGCTGGGAAGAGAGTGCAATTAC
ACCAGTTGGATTGTGCCTGTTGCGTGGCACCCAACCAACAAGAATGCAGTCATTACCGTCGATCTTGCGAAAAACCCGCA
ACCTCTACTCGATTTAACAACGGAACAGATCCACGAGCGCCTATACACCAAGCACAGCGATCTGGACGAAGGTGAATTGC
CTGTACCTGTTAAACTGGTTCACTTAAACAAGTGCCCTATTCTTGCCCCAGCTAAAACCCTGACCGCTGAGAATGCCGAG
AAAATCGGTATCGATCGTGAGCAGTGCTTGAAGAACCTAGCAATACTGCGCCAGAACCCAGAGATTCGAGAGAAGCTAAT
CGGTCTCTACAGCATCGAACGCGAATACGAAAGCAACGATGATGTCGATACGCAGCTATATGACGGCTTTTTCTCCCCAG
CAGACAAAGCGTCTATGGATATTATTCGCGAAACTGATCCAAACAATCTGGCGGCGCTAGATATTTCATTCAATGATCAG
CGAATAGCACCACTCTTGTTCCGCTACCGTGCGCGACATTTCCCGCTCACACTAGATGAACATGAACAACAAAAATGGGC
GAACCACTGCCGTGAATACTTCGAAAGTCGTATTGAAGATTACATGCTTAATTTGGAAAACTTAGTTCACGATTATGAGA
GTGATGAAAAGAAGCTCGCTATTTTAAAATCGGTGTACCAATACGTACAAAAGCTAGTATCTTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

77.801

99.789

0.776